Malaysian palm oil restoration (soil microbes)
Experimental design
- Five (5) plots of Malaysian palm oil plantation in various stages of
conversion.
- Active palm oil plot (0)
- 1 year fallow (1)
- 1 year fallow + 1 year managed (2)
- 1 year fallow + 2 years managed (3)
- 1 year fallow + 3 years managed (4)
- 16 samples from each plot
- For each sample we have ITS1-5.8S-ITS2 and full-length 16S
ITS1-5.8S-ITS2 and full-length 16S sequenced on the new PacBio Revio platform using their Kinnex technique.
Taxonomy assigned with:
Bacteria – SILVA v 138.1 Eukaryotes – Eukaryome v 1.9
Initial results
Soil chemistry
Alpha-diversity
In all samples, we have 687 fungal and
11509 bacterial ASVs.
Fungi (all)
AMF
Bacteria
Richness by treatment
Richness by soil vars
Beta-diversity
Ordinations
Dispersion
GDM (Envir. vs community structure)
Important taxa (that drive community differences)
Determined using differential abundance testing (corncob) and Random Forest models. These taxa were identified by both methods.
Fungi
Bacteria
Networks
Network properties
Species richness vs network properties
| taxa | term | estimate | std_error | df | t_value | pr_t |
|---|---|---|---|---|---|---|
| Bacteria | (Intercept) | 205.4647 | 17.4715 | 4.0273 | 11.7600 | 0.0003 |
| Bacteria | value | 11.0781 | 23.2882 | 705.9975 | 0.4757 | 0.6344 |
| Bacteria | value:clustering_coeficent | -34.9134 | 23.0893 | 706.0180 | -1.5121 | 0.1310 |
| Bacteria | value:global_effic | 11.7038 | 23.0892 | 705.9946 | 0.5069 | 0.6124 |
| Bacteria | value:max_degree | 76.8657 | 26.6775 | 706.0495 | 2.8813 | 0.0041 |
| Bacteria | value:mean_betweenness | 4.1376 | 22.8836 | 705.9940 | 0.1808 | 0.8566 |
| Bacteria | value:mean_closeness | -14.6407 | 25.3160 | 705.9989 | -0.5783 | 0.5632 |
| Bacteria | value:mean_coreness | 56.0953 | 24.9320 | 706.0462 | 2.2499 | 0.0248 |
| Bacteria | value:mean_dist | -36.7980 | 23.1115 | 706.0163 | -1.5922 | 0.1118 |
| Bacteria | value:n_vertices | 20.1276 | 23.1812 | 706.0001 | 0.8683 | 0.3855 |
| Fungi | (Intercept) | 62.2544 | 5.5512 | 4.1884 | 11.2146 | 0.0003 |
| Fungi | value | 11.7943 | 1.5817 | 706.6377 | 7.4566 | 0.0000 |
| Fungi | value:clustering_coeficent | -3.5871 | 1.8450 | 706.0263 | -1.9442 | 0.0523 |
| Fungi | value:global_effic | -0.7820 | 1.8709 | 706.0098 | -0.4180 | 0.6761 |
| Fungi | value:max_degree | 0.6721 | 2.0622 | 705.9903 | 0.3259 | 0.7446 |
| Fungi | value:mean_betweenness | 0.3084 | 1.9402 | 705.9949 | 0.1589 | 0.8738 |
| Fungi | value:mean_closeness | -23.5850 | 2.2242 | 707.2417 | -10.6038 | 0.0000 |
| Fungi | value:mean_coreness | -0.2386 | 2.0256 | 705.9909 | -0.1178 | 0.9063 |
| Fungi | value:mean_dist | -3.4385 | 1.9520 | 706.0011 | -1.7615 | 0.0786 |
| Fungi | value:n_vertices | -0.1543 | 2.0216 | 705.9895 | -0.0763 | 0.9392 |
| Both | (Intercept) | 236.9404 | 24.3470 | 4.0708 | 9.7318 | 0.0006 |
| Both | value | 23.7333 | 4.1294 | 706.2918 | 5.7474 | 0.0000 |
| Both | value:clustering_coeficent | -85.9959 | 14.6821 | 706.4612 | -5.8572 | 0.0000 |
| Both | value:global_effic | 0.7194 | 5.4494 | 705.9966 | 0.1320 | 0.8950 |
| Both | value:max_degree | -1.0820 | 4.5823 | 705.9964 | -0.2361 | 0.8134 |
| Both | value:mean_betweenness | 20.9102 | 6.2364 | 706.1315 | 3.3529 | 0.0008 |
| Both | value:mean_closeness | -63.7216 | 10.8343 | 706.2910 | -5.8815 | 0.0000 |
| Both | value:mean_coreness | -0.1882 | 4.6691 | 705.9978 | -0.0403 | 0.9679 |
| Both | value:mean_dist | -68.6697 | 10.7391 | 706.3033 | -6.3944 | 0.0000 |
| Both | value:n_vertices | 7.1636 | 4.9459 | 706.0231 | 1.4484 | 0.1479 |
Hub taxa (key network influencers)
| hub_taxon | hub_score | taxa |
|---|---|---|
| Fungi_Ascomycota_Dothideomycetes_Natipusillales_Natipusillaceae_unclassified_sp. | 0.5250886 | Fungi |
| Fungi_Ascomycota_Dothideomycetes_Botryosphaeriales_Botryosphaeriaceae_Lasiodiplodia_theobromae | 0.7642418 | Fungi |
| Fungi_Ascomycota_Sordariomycetes_Chaetosphaeriales_Chaetosphaeriaceae_Chloridium_sp. | 0.7730463 | Fungi |
| Fungi_Ascomycota_Sordariomycetes_Hypocreales_Stachybotryaceae_Paramyrothecium_roridum | 0.6484516 | Fungi |
| Fungi_Ascomycota_Sordariomycetes_Hypocreales_Hypocreaceae_Trichoderma_arundinaceum | 1.0000000 | Fungi |
| Fungi_Ascomycota_Sordariomycetes_Hypocreales_Nectriaceae_Fusarium_oxysporum | 0.6768440 | Fungi |
| Fungi_Ascomycota_Sordariomycetes_Hypocreales_Nectriaceae_Fusarium_sp. | 0.5951088 | Fungi |
| Bacteria_Planctomycetota_Phycisphaerae_Phycisphaerales_Phycisphaeraceae_AKYG587_sp. | 0.6528509 | Bacteria |
| Bacteria_Planctomycetota_Planctomycetes_Planctomycetales_Schlesneriaceae_Planctopirus_sp. | 0.6780863 | Bacteria |
| Bacteria_Planctomycetota_Planctomycetes_Pirellulales_Pirellulaceae_Blastopirellula_sp. | 0.5507941 | Bacteria |
| Bacteria_Planctomycetota_Planctomycetes_Pirellulales_Pirellulaceae_Pirellula_sp. | 0.7123121 | Bacteria |
| Bacteria_Planctomycetota_Planctomycetes_Pirellulales_Pirellulaceae_Pir4 lineage_sp. | 0.5669084 | Bacteria |
| Bacteria_Planctomycetota_Planctomycetes_Isosphaerales_Isosphaeraceae_Aquisphaera_sp. | 0.6359722 | Bacteria |
| Bacteria_Planctomycetota_Planctomycetes_Gemmatales_Gemmataceae_Fimbriiglobus_sp. | 0.7229554 | Bacteria |
| Bacteria_Verrucomicrobiota_Verrucomicrobiae_Pedosphaerales_Pedosphaeraceae_sp. | 0.6310239 | Bacteria |
| Bacteria_Verrucomicrobiota_Verrucomicrobiae_Pedosphaerales_Pedosphaeraceae_Pedosphaera_sp. | 0.5668391 | Bacteria |
| Bacteria_Verrucomicrobiota_Verrucomicrobiae_Pedosphaerales_Pedosphaeraceae_ADurb.Bin063-1_sp. | 0.8778464 | Bacteria |
| Bacteria_Verrucomicrobiota_Verrucomicrobiae_Chthoniobacterales_Chthoniobacteraceae_sp. | 0.5154318 | Bacteria |
| Bacteria_Verrucomicrobiota_Verrucomicrobiae_Chthoniobacterales_Chthoniobacteraceae_Candidatus Udaeobacter_sp. | 0.5689730 | Bacteria |
| Bacteria_Chloroflexi_Chloroflexia_Thermomicrobiales_JG30-KF-CM45_sp. | 0.7645676 | Bacteria |
| Bacteria_Chloroflexi_Chloroflexia_Chloroflexales_Roseiflexaceae_sp. | 0.6392384 | Bacteria |
| Bacteria_Chloroflexi_Anaerolineae_Anaerolineales_Anaerolineaceae_UTCFX1_sp. | 0.7414524 | Bacteria |
| Bacteria_Chloroflexi_Ktedonobacteria_Ktedonobacterales_Ktedonobacteraceae_FCPS473_sp. | 0.6808975 | Bacteria |
| Bacteria_Chloroflexi_Ktedonobacteria_Ktedonobacterales_Ktedonobacteraceae_HSB OF53-F07_sp. | 0.6179238 | Bacteria |
| Bacteria_Bacteroidota_Kryptonia_Kryptoniales_BSV26_sp. | 0.6756744 | Bacteria |
| Bacteria_Bacteroidota_Bacteroidia_Flavobacteriales_NS9 marine group_sp. | 0.6033936 | Bacteria |
| Bacteria_Bacteroidota_Bacteroidia_Chitinophagales_Chitinophagaceae_UTBCD1_sp. | 0.6518781 | Bacteria |
| Bacteria_Spirochaetota_Spirochaetia_Spirochaetales_Spirochaetaceae_Spirochaeta_sp. | 0.5262598 | Bacteria |
| Bacteria_Entotheonellaeota_Entotheonellia_Entotheonellales_Entotheonellaceae_sp. | 0.5680486 | Bacteria |
| Bacteria_Methylomirabilota_Methylomirabilia_Rokubacteriales_WX65_sp. | 0.7602448 | Bacteria |
| Bacteria_Actinobacteriota_Thermoleophilia_Solirubrobacterales_Solirubrobacteraceae_sp. | 0.7082722 | Bacteria |
| Bacteria_Actinobacteriota_Thermoleophilia_Solirubrobacterales_Solirubrobacteraceae_Solirubrobacter_sp. | 0.6237417 | Bacteria |
| Bacteria_Actinobacteriota_Acidimicrobiia_Microtrichales_Ilumatobacteraceae_Ilumatobacter_sp. | 0.6474581 | Bacteria |
| Bacteria_Actinobacteriota_Acidimicrobiia_Microtrichales_Ilumatobacteraceae_CL500-29 marine group_sp. | 0.5087122 | Bacteria |
| Bacteria_Actinobacteriota_Actinobacteria_Micrococcales_Microbacteriaceae_Agromyces_sp. | 0.6420621 | Bacteria |
| Bacteria_Actinobacteriota_Actinobacteria_Micrococcales_Intrasporangiaceae_Intrasporangium_sp. | 0.5781812 | Bacteria |
| Bacteria_Actinobacteriota_Actinobacteria_Streptomycetales_Streptomycetaceae_Streptomyces_glauciniger | 0.6585305 | Bacteria |
| Bacteria_Actinobacteriota_Actinobacteria_Streptomycetales_Streptomycetaceae_Streptomyces_sp. | 0.5086589 | Bacteria |
| Bacteria_Actinobacteriota_Actinobacteria_Micromonosporales_Micromonosporaceae_Actinoplanes_sp. | 0.6330562 | Bacteria |
| Bacteria_Actinobacteriota_Actinobacteria_Micromonosporales_Micromonosporaceae_Hamadaea_sp. | 0.6003769 | Bacteria |
| Bacteria_Actinobacteriota_Actinobacteria_Micromonosporales_Micromonosporaceae_Dactylosporangium_sp. | 0.6118131 | Bacteria |
| Bacteria_Actinobacteriota_Actinobacteria_Frankiales_Acidothermaceae_Acidothermus_sp. | 1.0000000 | Bacteria |
| Bacteria_Firmicutes_Bacilli_Bacillales_Bacillaceae_Bacillus_megaterium | 0.6921962 | Bacteria |
| Bacteria_Myxococcota_Myxococcia_Myxococcales_27F-1492R_sp. | 0.5711110 | Bacteria |
| Bacteria_Myxococcota_Myxococcia_Myxococcales_Anaeromyxobacteraceae_Anaeromyxobacter_sp. | 0.5248945 | Bacteria |
| Bacteria_Myxococcota_Polyangia_Polyangiales_Polyangiaceae_Pajaroellobacter_sp. | 0.8365949 | Bacteria |
| Bacteria_Acidobacteriota_Holophagae_Holophagales_Holophagaceae_Holophaga_sp. | 0.9566504 | Bacteria |
| Bacteria_Acidobacteriota_Blastocatellia_Blastocatellales_Blastocatellaceae_sp. | 0.5911481 | Bacteria |
| Bacteria_Acidobacteriota_Acidobacteriae_Solibacterales_Solibacteraceae_Candidatus Solibacter_sp. | 0.5990709 | Bacteria |
| Bacteria_Acidobacteriota_Acidobacteriae_Acidobacteriales_Acidobacteriaceae (Subgroup 1)_Occallatibacter_sp. | 0.5803394 | Bacteria |
| Bacteria_Acidobacteriota_Acidobacteriae_Acidobacteriales_Acidobacteriaceae (Subgroup 1)_sp. | 0.5329977 | Bacteria |
| Bacteria_Acidobacteriota_Acidobacteriae_Acidobacteriales_Koribacteraceae_Candidatus Koribacter_sp. | 0.7054082 | Bacteria |
| Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Rhodanobacteraceae_Mizugakiibacter_sp. | 0.5599828 | Bacteria |
| Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Rhodanobacteraceae_Rudaea_sp. | 0.5034123 | Bacteria |
| Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Rhodanobacteraceae_Dokdonella_sp. | 0.5649033 | Bacteria |
| Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Legionellaceae_Legionella_sp. | 0.5885422 | Bacteria |
| Bacteria_Proteobacteria_Gammaproteobacteria_Steroidobacterales_Woeseiaceae_JTB255 marine benthic group_sp. | 0.9426239 | Bacteria |
| Bacteria_Proteobacteria_Gammaproteobacteria_Steroidobacterales_Steroidobacteraceae_Steroidobacter_sp. | 0.9774622 | Bacteria |
| Bacteria_Proteobacteria_Gammaproteobacteria_Gammaproteobacteria Incertae Sedis_Unknown Family_Acidibacter_sp. | 0.7684594 | Bacteria |
| Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Alcaligenaceae_Bordetella_sp. | 0.5506756 | Bacteria |
| Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Gallionellaceae_Candidatus Nitrotoga_sp. | 0.5433830 | Bacteria |
| Bacteria_Proteobacteria_Alphaproteobacteria_Acetobacterales_Acetobacteraceae_Acidisoma_sp. | 0.5188143 | Bacteria |
| Bacteria_Proteobacteria_Alphaproteobacteria_Acetobacterales_Acetobacteraceae_Acidicaldus_sp. | 0.5228605 | Bacteria |
| Bacteria_Proteobacteria_Alphaproteobacteria_Reyranellales_Reyranellaceae_sp. | 0.6321139 | Bacteria |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhodospirillales_AEGEAN-169 marine group_sp. | 0.5476922 | Bacteria |
| Bacteria_Proteobacteria_Alphaproteobacteria_Elsterales_Elsteraceae_sp. | 0.5276454 | Bacteria |
| Bacteria_Proteobacteria_Alphaproteobacteria_Dongiales_Dongiaceae_Dongia_soli | 0.5464550 | Bacteria |
| Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Hyphomonadaceae_Hirschia_sp. | 0.5159542 | Bacteria |
| Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Altererythrobacter_sp. | 0.5391155 | Bacteria |
| Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Ellin6055_sp. | 0.5568949 | Bacteria |
| Bacteria_Proteobacteria_Alphaproteobacteria_Micropepsales_Micropepsaceae_sp. | 0.6549967 | Bacteria |
| Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Caulobacteraceae_sp. | 0.5796436 | Bacteria |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Hyphomicrobiaceae_Hyphomicrobium_sp. | 0.6536071 | Bacteria |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Hyphomicrobiaceae_Pedomicrobium_sp. | 0.7082306 | Bacteria |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Hyphomicrobiaceae_Hyphomicrobium_denitrificans | 0.5598463 | Bacteria |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Rhizobiaceae_Ensifer_adhaerens | 0.6678553 | Bacteria |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Rhizobiaceae_Allorhizobium-Neorhizobium-Pararhizobium-Rhizobium_sp. | 0.5573782 | Bacteria |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Rhizobiaceae_Mesorhizobium_sp. | 0.8431483 | Bacteria |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Beijerinckiaceae_Roseiarcus_sp. | 0.8394126 | Bacteria |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Xanthobacteraceae_Pseudorhodoplanes_sp. | 0.6936802 | Bacteria |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Xanthobacteraceae_Bradyrhizobium_sp. | 0.5291697 | Bacteria |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Xanthobacteraceae_sp. | 0.6708299 | Bacteria |
| Fungi_Ascomycota_Sordariomycetes_Amplistromatales_Amplistromataceae_unclassified_sp. | 0.7046291 | Both |
| Fungi_Ascomycota_Dothideomycetes_Jahnulales_Aliquandostipitaceae_unclassified_sp. | 0.5429062 | Both |
| Fungi_Ascomycota_Dothideomycetes_Pleosporales_Lophiostomataceae_Lophiostoma_sp. | 0.5267953 | Both |
| Fungi_Ascomycota_Dothideomycetes_Pleosporales_Dacampiaceae_Aaosphaeria_arxii | 0.6422840 | Both |
| Fungi_Ascomycota_Dothideomycetes_Pleosporales_Roussoellaceae_Neoroussoella_solani | 0.7196011 | Both |
| Fungi_Ascomycota_Dothideomycetes_Pleosporales_Didymosphaeriaceae_Paraconiothyrium_brasiliense | 0.6730466 | Both |
| Fungi_Ascomycota_Dothideomycetes_Pleosporales_Pyrenochaetopsidaceae_Pyrenochaetopsis_sp. | 0.5211027 | Both |
| Fungi_Ascomycota_Dothideomycetes_Pleosporales_Pleosporaceae_Bipolaris_sorokiniana | 0.7305181 | Both |
| Fungi_Ascomycota_Dothideomycetes_Pleosporales_Pleosporaceae_Curvularia_papendorfii | 0.7611368 | Both |
| Fungi_Ascomycota_Sordariomycetes_Coronophorales_Ceratostomataceae_Melanospora_sp. | 0.5258862 | Both |
| Fungi_Ascomycota_Orbiliomycetes_Orbiliales_Orbiliaceae_Arthrobotrys_sp. | 0.6541083 | Both |
| Fungi_Basidiomycota_Atractiellomycetes_Atractiellales_Hoehnelomycetaceae_unclassified_sp. | 0.7331107 | Both |
| Fungi_Mortierellomycota_unclassified_unclassified_unclassified_unclassified_sp. | 0.7478376 | Both |
| Fungi_Mucoromycota_Endogonomycetes_Langduoales_Langduoaceae_Langduoa_sp. | 0.7866005 | Both |
| Fungi_Basidiomycota_Tremellomycetes_Trichosporonales_Trichosporonaceae_Apiotrichum_porosum | 0.6123476 | Both |
| Fungi_Basidiomycota_Tremellomycetes_Tremellales_Trimorphomycetaceae_Saitozyma_sp. | 0.7412364 | Both |
| Fungi_Mortierellomycota_Mortierellomycetes_Mortierellales_Mortierellaceae_Actinomortierella_wolfii | 0.5634334 | Both |
| Fungi_Mortierellomycota_Mortierellomycetes_Mortierellales_Mortierellaceae_Actinomortierella_sp. | 0.7253692 | Both |
| Fungi_Mortierellomycota_Mortierellomycetes_Mortierellales_Mortierellaceae_Actinomortierella_ambigua | 0.5496879 | Both |
| Fungi_Basidiomycota_Geminibasidiomycetes_Geminibasidiales_Geminibasidiaceae_Geminibasidium_sp. | 0.8684836 | Both |
| Fungi_Basidiomycota_Agaricomycetes_Agaricales_Pluteaceae_Volvariella_volvacea | 0.5490255 | Both |
| Fungi_Basidiomycota_Agaricomycetes_Agaricales_Stephanosporaceae_Myriococcum_praecox | 0.5946410 | Both |
| Fungi_Basidiomycota_Agaricomycetes_Agaricales_Psathyrellaceae_Parasola_sp. | 0.5226239 | Both |
| Fungi_Basidiomycota_Agaricomycetes_Agaricales_Psathyrellaceae_Coprinopsis_cinerea | 0.6200095 | Both |
| Fungi_Basidiomycota_Agaricomycetes_Agaricales_Agaricales_fam_incertae_sedis_Lepista_sordida | 0.6083560 | Both |
| Fungi_Basidiomycota_Agaricomycetes_Agaricales_Agaricaceae_Lycoperdon_sp. | 0.7132200 | Both |
| Fungi_Basidiomycota_Agaricomycetes_Agaricales_Omphalotaceae_Gymnopus_pseudomphalodes | 0.6067528 | Both |
| Fungi_Chytridiomycota_Cladochytriomycetes_Cladochytriales_Septochytriaceae_unclassified_sp. | 0.7267901 | Both |
| Fungi_Glomeromycota_Glomeromycetes_Glomerales_Glomeraceae_Sclerocystis_sp. | 0.7229882 | Both |
| Fungi_Rozellomycota_Rozellomycota_cl_incertae_sedis_GS11_unclassified_unclassified_sp. | 0.9292242 | Both |
| Fungi_Chytridiomycota_Rhizophydiomycetes_Rhizophydiales_Terramycetaceae_Boothiomyces_sp. | 0.5688090 | Both |
| Fungi_Chytridiomycota_Rhizophydiomycetes_Rhizophydiales_Terramycetaceae_Terramyces_sp. | 0.5935302 | Both |
| Fungi_Chytridiomycota_Rhizophydiomycetes_Rhizophydiales_Angulomycetaceae_Angulomyces_argentinensis | 0.7505196 | Both |
| Fungi_Ascomycota_Sordariomycetes_Branch06_unclassified_unclassified_sp. | 1.0000000 | Both |
| Fungi_Ascomycota_Eurotiomycetes_Chaetothyriales_Cyphellophoraceae_Cyphellophora_sp. | 0.6533730 | Both |
| Fungi_Ascomycota_Eurotiomycetes_Eurotiales_Trichocomaceae_Thermomyces_lanuginosus | 0.9377234 | Both |
| Fungi_Ascomycota_Eurotiomycetes_Eurotiales_Aspergillaceae_Penicillium_citrinum | 0.7015316 | Both |
| Fungi_Ascomycota_Eurotiomycetes_Eurotiales_Aspergillaceae_sp. | 0.7704036 | Both |
| Fungi_Ascomycota_Eurotiomycetes_Eurotiales_Aspergillaceae_Penicillium_subrubescens | 0.6007208 | Both |
| Fungi_Ascomycota_Eurotiomycetes_Eurotiales_Aspergillaceae_Penicillium_sp. | 0.5173269 | Both |
| Fungi_Ascomycota_Eurotiomycetes_Eurotiales_Aspergillaceae_Aspergillus_fumigatus | 0.6120729 | Both |
| Fungi_Ascomycota_Eurotiomycetes_Eurotiales_Aspergillaceae_Aspergillus_niger | 0.8611670 | Both |
| Fungi_Ascomycota_Eurotiomycetes_Eurotiales_Trichocomaceae_Talaromyces_sp. | 0.6741653 | Both |
| Fungi_Ascomycota_Eurotiomycetes_Eurotiales_Trichocomaceae_Talaromyces_adpressus | 0.7177613 | Both |
| Fungi_Ascomycota_Dothideomycetes_Botryosphaeriales_Botryosphaeriaceae_Lasiodiplodia_sp. | 0.5527286 | Both |
| Fungi_Ascomycota_Dothideomycetes_Botryosphaeriales_Botryosphaeriaceae_Lasiodiplodia_theobromae | 0.7815847 | Both |
| Fungi_Ascomycota_Sordariomycetes_Xylariales_Microdochiaceae_Microdochium_bolleyi | 0.6983496 | Both |
| Fungi_Ascomycota_Sordariomycetes_Xylariales_unclassified_unclassified_sp. | 0.6457272 | Both |
| Fungi_Ascomycota_Sordariomycetes_Amphisphaeriales_Sporocadaceae_Neopestalotiopsis_clavispora | 0.7375893 | Both |
| Fungi_Ascomycota_Sordariomycetes_Amphisphaeriales_Sporocadaceae_sp. | 0.7015620 | Both |
| Fungi_Ascomycota_Sordariomycetes_Myrmecridiales_Myrmecridiaceae_Myrmecridium_phragmitis | 0.7614874 | Both |
| Fungi_Ascomycota_Sordariomycetes_Myrmecridiales_Myrmecridiaceae_Myrmecridium_sp. | 0.7135401 | Both |
| Fungi_Ascomycota_Sordariomycetes_Chaetosphaeriales_Chaetosphaeriaceae_Chaetosphaeria_sp. | 0.6607343 | Both |
| Fungi_Ascomycota_Sordariomycetes_Chaetosphaeriales_Chaetosphaeriaceae_Chloridium_sp. | 0.8280065 | Both |
| Fungi_Ascomycota_Sordariomycetes_Pisorisporiales_Pisorisporiaceae_Candelabrum(Fungi)_sp. | 0.5652245 | Both |
| Fungi_Ascomycota_Sordariomycetes_Sordariales_Sordariaceae_sp. | 0.6372934 | Both |
| Fungi_Ascomycota_Sordariomycetes_Sordariales_Sordariaceae_Sordaria_macrospora | 0.9685941 | Both |
| Fungi_Ascomycota_Sordariomycetes_Sordariales_Chaetomiaceae_Mycothermus_sp. | 0.9114539 | Both |
| Fungi_Ascomycota_Sordariomycetes_Sordariales_Chaetomiaceae_sp. | 0.5375970 | Both |
| Fungi_Ascomycota_Sordariomycetes_Sordariales_Podosporaceae_Cladorrhinum_sp. | 0.7498337 | Both |
| Fungi_Ascomycota_Sordariomycetes_Sordariales_Podosporaceae_sp. | 0.6592825 | Both |
| Fungi_Ascomycota_Sordariomycetes_Sordariales_Podosporaceae_Triangularia_verruculosa | 0.7615832 | Both |
| Fungi_Ascomycota_Sordariomycetes_Sordariales_Neoschizotheciaceae_unclassified_sp. | 0.6430815 | Both |
| Fungi_Ascomycota_Sordariomycetes_Sordariales_Schizotheciaceae_Lundqvistomyces_sp. | 0.7395071 | Both |
| Fungi_Ascomycota_Sordariomycetes_Glomerellales_Plectosphaerellaceae_Gibellulopsis_nigrescens | 0.5647111 | Both |
| Fungi_Ascomycota_Sordariomycetes_Glomerellales_Plectosphaerellaceae_Furcasterigmium_sp. | 0.8152954 | Both |
| Fungi_Ascomycota_Sordariomycetes_Glomerellales_Plectosphaerellaceae_sp. | 0.5937595 | Both |
| Fungi_Ascomycota_Sordariomycetes_Glomerellales_Plectosphaerellaceae_Gibellulopsis_sp. | 0.5685677 | Both |
| Fungi_Ascomycota_Sordariomycetes_Microascales_Microascaceae_Lophotrichus_fimeti | 0.6015148 | Both |
| Fungi_Ascomycota_Sordariomycetes_Microascales_Microascaceae_Rhinocladium_lesnei | 0.5389658 | Both |
| Fungi_Ascomycota_Sordariomycetes_Microascales_Microascaceae_Scedosporium_dehoogii | 0.8778437 | Both |
| Fungi_Ascomycota_Sordariomycetes_Microascales_Microascaceae_Pseudallescheria_boydii | 0.6049470 | Both |
| Fungi_Ascomycota_Sordariomycetes_Microascales_Microascaceae_sp. | 0.7242067 | Both |
| Fungi_Ascomycota_Sordariomycetes_Microascales_Ceratocystidaceae_Thielaviopsis_sp. | 0.6192192 | Both |
| Fungi_Ascomycota_Sordariomycetes_Hypocreales_Bionectriaceae_Acremonium_polychromum | 0.6378176 | Both |
| Fungi_Ascomycota_Sordariomycetes_Hypocreales_Bionectriaceae_Acremonium_sp. | 0.9892260 | Both |
| Fungi_Ascomycota_Sordariomycetes_Hypocreales_Stachybotryaceae_Paramyrothecium_roridum | 0.9969732 | Both |
| Fungi_Ascomycota_Sordariomycetes_Hypocreales_Hypocreaceae_Trichoderma_viride | 0.5857639 | Both |
| Fungi_Ascomycota_Sordariomycetes_Hypocreales_Hypocreaceae_Trichoderma_asperellum | 0.5817185 | Both |
| Fungi_Ascomycota_Sordariomycetes_Hypocreales_Hypocreaceae_Trichoderma_sp. | 0.5889289 | Both |
| Fungi_Ascomycota_Sordariomycetes_Hypocreales_Hypocreaceae_Trichoderma_arundinaceum | 0.7666840 | Both |
| Fungi_Ascomycota_Sordariomycetes_Hypocreales_Hypocreaceae_Trichoderma_lixii | 0.5286874 | Both |
| Fungi_Ascomycota_Sordariomycetes_Hypocreales_Hypocreaceae_Trichoderma_harzianum | 0.5546266 | Both |
| Fungi_Ascomycota_Sordariomycetes_Hypocreales_Hypocreaceae_Trichoderma_virens | 0.6333109 | Both |
| Fungi_Ascomycota_Sordariomycetes_Hypocreales_Clavicipitaceae_Pochonia_chlamydosporia | 0.7533927 | Both |
| Fungi_Ascomycota_Sordariomycetes_Hypocreales_sp. | 0.5775064 | Both |
| Fungi_Ascomycota_Sordariomycetes_Hypocreales_Bionectriaceae_Clonostachys_rosea | 0.6638425 | Both |
| Fungi_Ascomycota_Sordariomycetes_Hypocreales_Bionectriaceae_Clonostachys_sp. | 0.5632046 | Both |
| Fungi_Ascomycota_Sordariomycetes_Hypocreales_Bionectriaceae_sp. | 0.8738139 | Both |
| Fungi_Ascomycota_Sordariomycetes_Hypocreales_Bionectriaceae_Clonostachys_rossmaniae | 0.5761030 | Both |
| Fungi_Ascomycota_Sordariomycetes_Hypocreales_Nectriaceae_Bisifusarium_dimerum | 0.8744799 | Both |
| Fungi_Ascomycota_Sordariomycetes_Hypocreales_Nectriaceae_Gibberella_intricans | 0.8857990 | Both |
| Fungi_Ascomycota_Sordariomycetes_Hypocreales_Nectriaceae_Fusarium_oxysporum | 0.7856011 | Both |
| Fungi_Ascomycota_Sordariomycetes_Hypocreales_Nectriaceae_Mariannaea_elegans | 0.5257288 | Both |
| Fungi_Ascomycota_Sordariomycetes_Hypocreales_Nectriaceae_Mariannaea_sp. | 0.8800379 | Both |
| Fungi_Ascomycota_Sordariomycetes_Hypocreales_Nectriaceae_sp. | 0.5297859 | Both |
| Bacteria_Planctomycetota_Phycisphaerae_Phycisphaerales_Phycisphaeraceae_sp. | 0.5900907 | Both |
| Bacteria_Planctomycetota_Phycisphaerae_Phycisphaerales_Phycisphaeraceae_AKYG587_sp. | 0.6185250 | Both |
| Bacteria_Planctomycetota_Phycisphaerae_Tepidisphaerales_CPla-3 termite group_sp. | 0.7414633 | Both |
| Bacteria_Planctomycetota_Planctomycetes_Pirellulales_Pirellulaceae_Blastopirellula_sp. | 0.8265802 | Both |
| Bacteria_Planctomycetota_Planctomycetes_Pirellulales_Pirellulaceae_Pir2 lineage_sp. | 0.6228091 | Both |
| Bacteria_Planctomycetota_Planctomycetes_Isosphaerales_Isosphaeraceae_Paludisphaera_sp. | 0.6546481 | Both |
| Bacteria_Planctomycetota_Planctomycetes_Isosphaerales_Isosphaeraceae_Aquisphaera_sp. | 0.8311003 | Both |
| Bacteria_Planctomycetota_Planctomycetes_Isosphaerales_Isosphaeraceae_Candidatus Nostocoida_sp. | 0.7419301 | Both |
| Bacteria_Planctomycetota_Planctomycetes_Gemmatales_Gemmataceae_Fimbriiglobus_sp. | 0.7377912 | Both |
| Bacteria_Planctomycetota_Planctomycetes_Gemmatales_Gemmataceae_sp. | 0.5308540 | Both |
| Bacteria_Verrucomicrobiota_Verrucomicrobiae_Opitutales_Opitutaceae_Lacunisphaera_sp. | 0.5872685 | Both |
| Bacteria_Verrucomicrobiota_Verrucomicrobiae_Pedosphaerales_Pedosphaeraceae_SH3-11_sp. | 0.6003027 | Both |
| Bacteria_Verrucomicrobiota_Verrucomicrobiae_Pedosphaerales_Pedosphaeraceae_sp. | 0.6138802 | Both |
| Bacteria_Verrucomicrobiota_Verrucomicrobiae_Pedosphaerales_Pedosphaeraceae_Pedosphaera_sp. | 0.7732118 | Both |
| Bacteria_Verrucomicrobiota_Verrucomicrobiae_Pedosphaerales_Pedosphaeraceae_ADurb.Bin063-1_sp. | 0.7390338 | Both |
| Bacteria_Verrucomicrobiota_Verrucomicrobiae_Verrucomicrobiales_Rubritaleaceae_Luteolibacter_sp. | 0.9118350 | Both |
| Bacteria_Verrucomicrobiota_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Roseimicrobium_sp. | 0.6619478 | Both |
| Bacteria_Verrucomicrobiota_Verrucomicrobiae_Chthoniobacterales_Terrimicrobiaceae_FukuN18 freshwater group_sp. | 0.6274299 | Both |
| Bacteria_Verrucomicrobiota_Verrucomicrobiae_Chthoniobacterales_Chthoniobacteraceae_Chthoniobacter_sp. | 0.5666482 | Both |
| Bacteria_Verrucomicrobiota_Verrucomicrobiae_Chthoniobacterales_Chthoniobacteraceae_sp. | 0.6296069 | Both |
| Bacteria_Verrucomicrobiota_Verrucomicrobiae_Chthoniobacterales_Chthoniobacteraceae_Candidatus Udaeobacter_sp. | 0.8468636 | Both |
| Bacteria_Armatimonadota_Fimbriimonadia_Fimbriimonadales_Fimbriimonadaceae_sp. | 0.6653863 | Both |
| Bacteria_Armatimonadota_Chthonomonadetes_Chthonomonadales_Chthonomonadaceae_Chthonomonas_sp. | 0.7211429 | Both |
| Bacteria_Chloroflexi_Chloroflexia_Thermomicrobiales_AKYG1722_sp. | 0.9528825 | Both |
| Bacteria_Chloroflexi_Chloroflexia_Thermomicrobiales_JG30-KF-CM45_sp. | 0.5686468 | Both |
| Bacteria_Chloroflexi_Chloroflexia_Chloroflexales_Roseiflexaceae_sp. | 0.6257882 | Both |
| Bacteria_Chloroflexi_Anaerolineae_Caldilineales_Caldilineaceae_Litorilinea_sp. | 0.6642121 | Both |
| Bacteria_Chloroflexi_Anaerolineae_Anaerolineales_Anaerolineaceae_UTCFX1_sp. | 0.6537033 | Both |
| Bacteria_Chloroflexi_Anaerolineae_Anaerolineales_Anaerolineaceae_Anaerolinea_sp. | 0.6479771 | Both |
| Bacteria_Chloroflexi_Ktedonobacteria_Ktedonobacterales_JG30-KF-AS9_sp. | 0.8947180 | Both |
| Bacteria_Chloroflexi_Ktedonobacteria_Ktedonobacterales_Ktedonobacteraceae_FCPS473_sp. | 0.5615108 | Both |
| Bacteria_Chloroflexi_Ktedonobacteria_Ktedonobacterales_Ktedonobacteraceae_1959-1_sp. | 0.5545937 | Both |
| Bacteria_Chloroflexi_Ktedonobacteria_Ktedonobacterales_Ktedonobacteraceae_1921-2_sp. | 0.8597404 | Both |
| Bacteria_Patescibacteria_Saccharimonadia_Saccharimonadales_WWH38_sp. | 0.7683242 | Both |
| Bacteria_Patescibacteria_Saccharimonadia_Saccharimonadales_LWQ8_sp. | 0.6120889 | Both |
| Bacteria_Fibrobacterota_Fibrobacteria_Fibrobacterales_Fibrobacteraceae_possible genus 04_sp. | 0.5613976 | Both |
| Bacteria_Dependentiae_Babeliae_Babeliales_Babeliaceae_sp. | 0.8066400 | Both |
| Bacteria_Bacteroidota_Kryptonia_Kryptoniales_BSV26_sp. | 0.6008242 | Both |
| Bacteria_Bacteroidota_Bacteroidia_Cytophagales_Microscillaceae_sp. | 0.6867930 | Both |
| Bacteria_Bacteroidota_Bacteroidia_Cytophagales_Microscillaceae_Chryseolinea_sp. | 0.5879348 | Both |
| Bacteria_Bacteroidota_Bacteroidia_Sphingobacteriales_AKYH767_sp. | 0.6216450 | Both |
| Bacteria_Bacteroidota_Bacteroidia_Sphingobacteriales_CWT CU03-E12_sp. | 0.8642699 | Both |
| Bacteria_Bacteroidota_Bacteroidia_Sphingobacteriales_Sphingobacteriaceae_Mucilaginibacter_sp. | 0.6724443 | Both |
| Bacteria_Bacteroidota_Bacteroidia_Sphingobacteriales_Sphingobacteriaceae_sp. | 0.7321172 | Both |
| Bacteria_Bacteroidota_Bacteroidia_Flavobacteriales_NS9 marine group_sp. | 0.8908158 | Both |
| Bacteria_Bacteroidota_Bacteroidia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_sp. | 0.5708077 | Both |
| Bacteria_Bacteroidota_Bacteroidia_Chitinophagales_Saprospiraceae_sp. | 0.5739203 | Both |
| Bacteria_Bacteroidota_Bacteroidia_Chitinophagales_37-13_sp. | 0.5914228 | Both |
| Bacteria_Bacteroidota_Bacteroidia_Chitinophagales_Chitinophagaceae_Edaphobaculum_sp. | 0.6204989 | Both |
| Bacteria_Bacteroidota_Bacteroidia_Chitinophagales_Chitinophagaceae_Dinghuibacter_sp. | 0.8317872 | Both |
| Bacteria_Bacteroidota_Bacteroidia_Chitinophagales_Chitinophagaceae_Filimonas_sp. | 0.6289735 | Both |
| Bacteria_Bacteroidota_Bacteroidia_Chitinophagales_Chitinophagaceae_Niveitalea_solisilvae | 0.6433665 | Both |
| Bacteria_Bacteroidota_Bacteroidia_Chitinophagales_Chitinophagaceae_Flavisolibacter_sp. | 0.7158232 | Both |
| Bacteria_Bacteroidota_Bacteroidia_Chitinophagales_Chitinophagaceae_Flavihumibacter_sp. | 0.7894636 | Both |
| Bacteria_Bacteroidota_Bacteroidia_Chitinophagales_Chitinophagaceae_Flavitalea_sp. | 0.9495284 | Both |
| Bacteria_Bacteroidota_Bacteroidia_Chitinophagales_Chitinophagaceae_UTBCD1_sp. | 0.6636446 | Both |
| Bacteria_Bacteroidota_Bacteroidia_Chitinophagales_Chitinophagaceae_Terrimonas_sp. | 0.6129794 | Both |
| Bacteria_Spirochaetota_Spirochaetia_Spirochaetales_Spirochaetaceae_Spirochaeta 2_aurantia | 0.5481425 | Both |
| Bacteria_Spirochaetota_Spirochaetia_Spirochaetales_Spirochaetaceae_Spirochaeta_sp. | 0.5666259 | Both |
| Bacteria_Gemmatimonadota_Gemmatimonadetes_Gemmatimonadales_Gemmatimonadaceae_sp. | 0.6720141 | Both |
| Bacteria_Entotheonellaeota_Entotheonellia_Entotheonellales_Entotheonellaceae_sp. | 0.6843877 | Both |
| Bacteria_Nitrospirota_Nitrospiria_Nitrospirales_Nitrospiraceae_Nitrospira_sp. | 0.6072210 | Both |
| Bacteria_Cyanobacteria_Vampirivibrionia_Vampirovibrionales_Vampirovibrionaceae_Vampirovibrio_sp. | 0.6656769 | Both |
| Bacteria_Cyanobacteria_Vampirivibrionia_Obscuribacterales_Obscuribacteraceae_sp. | 0.5667396 | Both |
| Bacteria_Cyanobacteria_Cyanobacteriia_Cyanobacteriales_Nostocaceae_sp. | 0.8141584 | Both |
| Bacteria_Desulfobacterota_Desulfovibrionia_Desulfovibrionales_Desulfovibrionaceae_Desulfovibrio_putealis | 0.6216997 | Both |
| Bacteria_Latescibacterota_Latescibacteria_Latescibacterales_Latescibacteraceae_sp. | 0.5380977 | Both |
| Bacteria_Desulfobacterota_Syntrophorhabdia_Syntrophorhabdales_Syntrophorhabdaceae_Syntrophorhabdus_sp. | 0.5296889 | Both |
| Bacteria_Methylomirabilota_Methylomirabilia_Methylomirabilales_Methylomirabilaceae_Sh765B-TzT-35_sp. | 0.6038877 | Both |
| Bacteria_Methylomirabilota_Methylomirabilia_Rokubacteriales_WX65_sp. | 0.7537479 | Both |
| Bacteria_Actinobacteriota_Thermoleophilia_Solirubrobacterales_Solirubrobacteraceae_JCM 18997_sp. | 0.7076135 | Both |
| Bacteria_Actinobacteriota_Thermoleophilia_Solirubrobacterales_Solirubrobacteraceae_sp. | 0.5893799 | Both |
| Bacteria_Actinobacteriota_Thermoleophilia_Solirubrobacterales_Solirubrobacteraceae_Conexibacter_sp. | 0.6457526 | Both |
| Bacteria_Actinobacteriota_Thermoleophilia_Solirubrobacterales_Solirubrobacteraceae_Solirubrobacter_sp. | 0.5737984 | Both |
| Bacteria_Actinobacteriota_Acidimicrobiia_Microtrichales_Microtrichaceae_sp. | 0.5733287 | Both |
| Bacteria_Actinobacteriota_Acidimicrobiia_Microtrichales_Ilumatobacteraceae_CL500-29 marine group_sp. | 0.6756013 | Both |
| Bacteria_Actinobacteriota_Acidimicrobiia_Microtrichales_Ilumatobacteraceae_sp. | 0.5799001 | Both |
| Bacteria_Actinobacteriota_Actinobacteria_Streptosporangiales_Thermomonosporaceae_Thermobispora_bispora | 0.6852957 | Both |
| Bacteria_Actinobacteriota_Actinobacteria_Pseudonocardiales_Pseudonocardiaceae_Amycolatopsis_sp. | 0.6642619 | Both |
| Bacteria_Actinobacteriota_Actinobacteria_Pseudonocardiales_Pseudonocardiaceae_Actinophytocola_sp. | 0.5753832 | Both |
| Bacteria_Actinobacteriota_Actinobacteria_Pseudonocardiales_Pseudonocardiaceae_Pseudonocardia_sp. | 0.9059811 | Both |
| Bacteria_Actinobacteriota_Actinobacteria_Corynebacteriales_Nocardiaceae_Rhodococcus_sp. | 0.6039871 | Both |
| Bacteria_Actinobacteriota_Actinobacteria_Corynebacteriales_Nocardiaceae_Nocardia_sp. | 0.5682788 | Both |
| Bacteria_Actinobacteriota_Actinobacteria_Corynebacteriales_Mycobacteriaceae_Mycobacterium_peregrinum | 0.7414431 | Both |
| Bacteria_Actinobacteriota_Actinobacteria_Corynebacteriales_Mycobacteriaceae_Mycobacterium_rhodesiae | 0.7020729 | Both |
| Bacteria_Actinobacteriota_Actinobacteria_Micrococcales_Microbacteriaceae_Lysinimonas_sp. | 0.5774825 | Both |
| Bacteria_Actinobacteriota_Actinobacteria_Micrococcales_Microbacteriaceae_Microbacterium_sp. | 0.6256553 | Both |
| Bacteria_Actinobacteriota_Actinobacteria_Micrococcales_Microbacteriaceae_Agromyces_sp. | 0.7448880 | Both |
| Bacteria_Actinobacteriota_Actinobacteria_Micrococcales_Demequinaceae_Demequina_sp. | 0.5685339 | Both |
| Bacteria_Actinobacteriota_Actinobacteria_Micrococcales_Intrasporangiaceae_Intrasporangium_sp. | 0.8652686 | Both |
| Bacteria_Actinobacteriota_Actinobacteria_Micrococcales_Intrasporangiaceae_Oryzihumus_leptocrescens | 0.6661248 | Both |
| Bacteria_Actinobacteriota_Actinobacteria_Micrococcales_Promicromonosporaceae_Cellulosimicrobium_cellulans | 0.5442927 | Both |
| Bacteria_Actinobacteriota_Actinobacteria_Micrococcales_Cellulomonadaceae_Cellulomonas_sp. | 0.6785901 | Both |
| Bacteria_Actinobacteriota_Actinobacteria_Streptomycetales_Streptomycetaceae_Streptomyces_lannensis | 0.7099789 | Both |
| Bacteria_Actinobacteriota_Actinobacteria_Streptomycetales_Streptomycetaceae_Streptomyces_griseochromogenes | 0.6716114 | Both |
| Bacteria_Actinobacteriota_Actinobacteria_Streptomycetales_Streptomycetaceae_Kitasatospora_aureofaciens | 0.6382575 | Both |
| Bacteria_Actinobacteriota_Actinobacteria_Frankiales_Frankiaceae_Frankia_sp. | 0.5747385 | Both |
| Bacteria_Actinobacteriota_Actinobacteria_Frankiales_Frankiaceae_Jatrophihabitans_sp. | 0.6906644 | Both |
| Bacteria_Actinobacteriota_Actinobacteria_Catenulisporales_Actinospicaceae_Actinospica_sp. | 0.7245869 | Both |
| Bacteria_Actinobacteriota_Actinobacteria_Propionibacteriales_Nocardioidaceae_Kribbella_sp. | 0.8071332 | Both |
| Bacteria_Actinobacteriota_Actinobacteria_Micromonosporales_Micromonosporaceae_Actinoplanes_sp. | 0.6104699 | Both |
| Bacteria_Actinobacteriota_Actinobacteria_Micromonosporales_Micromonosporaceae_Phytohabitans_sp. | 0.6871333 | Both |
| Bacteria_Actinobacteriota_Actinobacteria_Micromonosporales_Micromonosporaceae_Hamadaea_sp. | 0.7141550 | Both |
| Bacteria_Actinobacteriota_Actinobacteria_Micromonosporales_Micromonosporaceae_Asanoa_sp. | 0.7730383 | Both |
| Bacteria_Actinobacteriota_Actinobacteria_Micromonosporales_Micromonosporaceae_Verrucosispora_sp. | 0.6844757 | Both |
| Bacteria_Actinobacteriota_Actinobacteria_Micromonosporales_Micromonosporaceae_sp. | 0.5922718 | Both |
| Bacteria_Actinobacteriota_Actinobacteria_Frankiales_Acidothermaceae_Acidothermus_sp. | 0.6374043 | Both |
| Bacteria_Firmicutes_Clostridia_Lachnospirales_Lachnospiraceae_Lachnoclostridium_sp. | 0.5324634 | Both |
| Bacteria_Firmicutes_Bacilli_Lactobacillales_Streptococcaceae_Lactococcus_lactis | 0.5564787 | Both |
| Bacteria_Firmicutes_Bacilli_Lactobacillales_Streptococcaceae_Lactovum_sp. | 0.6891835 | Both |
| Bacteria_Firmicutes_Bacilli_Thermoactinomycetales_Thermoactinomycetaceae_Thermoactinomyces_intermedius | 0.6628205 | Both |
| Bacteria_Firmicutes_Bacilli_Paenibacillales_Paenibacillaceae_Ammoniphilus_sp. | 0.5567843 | Both |
| Bacteria_Firmicutes_Bacilli_Bacillales_Bacillaceae_Fictibacillus_sp. | 0.6320346 | Both |
| Bacteria_Firmicutes_Bacilli_Bacillales_Bacillaceae_Bacillus_smithii | 0.6382824 | Both |
| Bacteria_Firmicutes_Bacilli_Bacillales_Bacillaceae_Bacillus_huizhouensis | 0.5707471 | Both |
| Bacteria_Firmicutes_Bacilli_Bacillales_Bacillaceae_Bacillus_circulans | 0.5950212 | Both |
| Bacteria_Firmicutes_Bacilli_Bacillales_Bacillaceae_Bacillus_jeotgali | 0.5403659 | Both |
| Bacteria_Firmicutes_Bacilli_Bacillales_Bacillaceae_Bacillus_megaterium | 0.5745231 | Both |
| Bacteria_Firmicutes_Bacilli_Bacillales_Bacillaceae_Bacillus_mycoides | 0.5541503 | Both |
| Bacteria_Firmicutes_Bacilli_Bacillales_Bacillaceae_Bacillus_acidiceler | 0.7212670 | Both |
| Bacteria_Bdellovibrionota_Bdellovibrionia_Bdellovibrionales_Bdellovibrionaceae_Bdellovibrio_sp. | 0.7549192 | Both |
| Bacteria_Desulfobacterota_Desulfuromonadia_Geobacterales_Geobacteraceae_Geobacter_pickeringii | 0.5146844 | Both |
| Bacteria_Desulfobacterota_Desulfuromonadia_Geobacterales_Geobacteraceae_Citrifermentans_sp. | 0.5816359 | Both |
| Bacteria_Desulfobacterota_Desulfuromonadia_Geobacterales_Geobacteraceae_Geobacter_sp. | 0.5616400 | Both |
| Bacteria_Desulfobacterota_Desulfobaccia_Desulfobaccales_Desulfobaccaceae_Desulfobacca_sp. | 0.6707201 | Both |
| Bacteria_Desulfobacterota_Desulfomonilia_Desulfomonilales_Desulfomonilaceae_Desulfomonile_sp. | 0.8849838 | Both |
| Bacteria_Desulfobacterota_Syntrophobacteria_Syntrophobacterales_Syntrophobacteraceae_sp. | 0.6969167 | Both |
| Bacteria_Myxococcota_Myxococcia_Myxococcales_Myxococcaceae_P3OB-42_sp. | 0.7695590 | Both |
| Bacteria_Myxococcota_Myxococcia_Myxococcales_27F-1492R_sp. | 0.5421231 | Both |
| Bacteria_Myxococcota_Myxococcia_Myxococcales_Myxococcaceae_sp. | 0.7190433 | Both |
| Bacteria_Myxococcota_Myxococcia_Myxococcales_Anaeromyxobacteraceae_Anaeromyxobacter_dehalogenans | 0.8426102 | Both |
| Bacteria_Myxococcota_Myxococcia_Myxococcales_Anaeromyxobacteraceae_Anaeromyxobacter_sp. | 0.8359976 | Both |
| Bacteria_Myxococcota_Polyangia_Polyangiales_Sandaracinaceae_sp. | 0.5818338 | Both |
| Bacteria_Myxococcota_Polyangia_Polyangiales_Polyangiaceae_sp. | 0.7727036 | Both |
| Bacteria_Myxococcota_Polyangia_Polyangiales_Polyangiaceae_Sorangium_cellulosum | 0.6847639 | Both |
| Bacteria_Myxococcota_Polyangia_Polyangiales_Polyangiaceae_Polyangium_sp. | 0.7406944 | Both |
| Bacteria_Myxococcota_Polyangia_Polyangiales_Polyangiaceae_Labilithrix_luteola | 0.7194563 | Both |
| Bacteria_Myxococcota_Polyangia_Polyangiales_Polyangiaceae_Pajaroellobacter_sp. | 0.6935694 | Both |
| Bacteria_Acidobacteriota_Thermoanaerobaculia_Thermoanaerobaculales_Thermoanaerobaculaceae_Subgroup 10_sp. | 0.8635404 | Both |
| Bacteria_Acidobacteriota_Vicinamibacteria_Vicinamibacterales_Vicinamibacteraceae_Vicinamibacter_sp. | 0.6156368 | Both |
| Bacteria_Acidobacteriota_Holophagae_Holophagales_Holophagaceae_sp. | 0.5860303 | Both |
| Bacteria_Acidobacteriota_Holophagae_Holophagales_Holophagaceae_Holophaga_sp. | 0.8422655 | Both |
| Bacteria_Acidobacteriota_Blastocatellia_Blastocatellales_Blastocatellaceae_sp. | 0.5301423 | Both |
| Bacteria_Acidobacteriota_Acidobacteriae_Acidobacteriales_Acidobacteriaceae (Subgroup 1)_Granulicella_sp. | 0.6403266 | Both |
| Bacteria_Acidobacteriota_Acidobacteriae_Acidobacteriales_Acidobacteriaceae (Subgroup 1)_Edaphobacter_sp. | 0.6315324 | Both |
| Bacteria_Acidobacteriota_Acidobacteriae_Acidobacteriales_Acidobacteriaceae (Subgroup 1)_Acidipila-Silvibacterium_sp. | 0.8469249 | Both |
| Bacteria_Acidobacteriota_Acidobacteriae_Acidobacteriales_Acidobacteriaceae (Subgroup 1)_Occallatibacter_sp. | 0.7149300 | Both |
| Bacteria_Acidobacteriota_Acidobacteriae_Acidobacteriales_Koribacteraceae_Candidatus Koribacter_sp. | 0.5166152 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Xanthomonadaceae_Luteimonas_sp. | 0.5706428 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Xanthomonadaceae_Lysobacter_dokdonensis | 0.5319226 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Rhodanobacteraceae_Mizugakiibacter_sp. | 0.5189774 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Rhodanobacteraceae_Chujaibacter_sp. | 0.9353416 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Rhodanobacteraceae_Rudaea_sp. | 0.5589712 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Rhodanobacteraceae_Rhodanobacter_sp. | 0.5944773 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Rhodanobacteraceae_sp. | 0.8172390 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Rhodanobacteraceae_Dyella_sp. | 0.7964313 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Rhodanobacteraceae_Dyella_jiangningensis | 0.5983202 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Gammaproteobacteria Incertae Sedis_Unknown Family_Candidatus Ovatusbacter_sp. | 0.7042585 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Legionellaceae_Legionella_sp. | 0.9150260 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Diplorickettsiales_Diplorickettsiaceae_sp. | 0.6334224 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Diplorickettsiales_Diplorickettsiaceae_Aquicella_sp. | 0.5630866 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Steroidobacterales_Woeseiaceae_JTB255 marine benthic group_sp. | 0.6488881 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Steroidobacterales_Steroidobacteraceae_Steroidobacter_sp. | 0.7517461 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Steroidobacterales_Steroidobacteraceae_sp. | 0.5649264 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Gammaproteobacteria Incertae Sedis_Unknown Family_Acidibacter_sp. | 0.5832372 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Chromobacteriaceae_Pseudogulbenkiania_sp. | 0.5557035 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Chromobacteriaceae_Crenobacter_sp. | 0.7886149 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Nitrosomonadaceae_Ellin6067_sp. | 0.6726064 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Comamonadaceae_Ramlibacter_sp. | 0.7726001 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Comamonadaceae_Variovorax_sp. | 0.7841464 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Comamonadaceae_Leptothrix_sp. | 0.5919403 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Comamonadaceae_Rivibacter_sp. | 0.5417826 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Comamonadaceae_Rhizobacter_sp. | 0.5587365 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Comamonadaceae_Methylibium_sp. | 0.5498729 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Burkholderiaceae_Burkholderia-Caballeronia-Paraburkholderia_cepacia | 0.5754227 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Burkholderiaceae_Burkholderia-Caballeronia-Paraburkholderia_caribensis | 0.5663016 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Burkholderiaceae_Burkholderia-Caballeronia-Paraburkholderia_unamae | 0.7029974 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Burkholderiaceae_Burkholderia-Caballeronia-Paraburkholderia_sp. | 0.6329409 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Oxalobacteraceae_sp. | 0.7525625 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Alcaligenaceae_Achromobacter_sp. | 0.7758252 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Alcaligenaceae_Bordetella_sp. | 0.6417044 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Sutterellaceae_sp. | 0.7604876 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_TRA3-20_sp. | 0.6423851 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_B1-7BS_sp. | 0.9461865 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Nitrosomonadaceae_GOUTA6_sp. | 0.6266310 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Nitrosomonadaceae_MND1_sp. | 0.5349263 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Rhodocyclaceae_Azovibrio_sp. | 0.5663115 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Rhodocyclaceae_sp. | 0.6671637 | Both |
| Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Gallionellaceae_Candidatus Nitrotoga_sp. | 0.5926731 | Both |
| Bacteria_Bdellovibrionota_Bdellovibrionia_Bdellovibrionales_Bdellovibrionaceae_OM27 clade_sp. | 0.5649430 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Tistrellales_Geminicoccaceae_Candidatus Alysiosphaera_sp. | 0.8720591 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Acetobacterales_Acetobacteraceae_Roseomonas_sp. | 0.5157345 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Acetobacterales_Acetobacteraceae_Acidisoma_sp. | 0.5539642 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Acetobacterales_Acetobacteraceae_Acidicaldus_sp. | 0.5939931 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Reyranellales_Reyranellaceae_sp. | 0.7159113 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Reyranellales_Reyranellaceae_Reyranella_sp. | 0.5216228 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rickettsiales_AB1_sp. | 0.7640337 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Holosporales_Holosporaceae_sp. | 0.7971221 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhodospirillales_AEGEAN-169 marine group_sp. | 0.7536229 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhodospirillales_Magnetospirillaceae_Telmatospirillum_sp. | 0.7563825 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Azospirillales_Inquilinaceae_Inquilinus_sp. | 0.7120786 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Elsterales_Elsteraceae_sp. | 0.8026076 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Dongiales_Dongiaceae_Dongia_soli | 0.5385612 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Hyphomonadaceae_sp. | 0.7937143 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Novosphingobium_sp. | 0.7662949 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingobium_sp. | 0.5771225 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Altererythrobacter_sp. | 0.7093105 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Plot4-2H12_sp. | 0.7593289 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Ellin6055_sp. | 0.5267744 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_A0839_sp. | 0.8214840 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_KF-JG30-B3_sp. | 0.5627429 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Micropepsales_Micropepsaceae_Micropepsis_sp. | 0.7022573 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Micropepsales_Micropepsaceae_sp. | 0.6330073 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Caulobacteraceae_Phenylobacterium_sp. | 0.6545267 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Caulobacteraceae_sp. | 0.6976044 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Rhizobiales Incertae Sedis_sp. | 0.5820610 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Rhizobiales Incertae Sedis_Nordella_oligomobilis | 0.5555472 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Hyphomicrobiaceae_Pedomicrobium_sp. | 0.9299934 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Hyphomicrobiaceae_Hyphomicrobium_facile | 0.6508398 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Hyphomicrobiaceae_Hyphomicrobium_denitrificans | 0.5503336 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Devosiaceae_sp. | 0.8341489 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Devosiaceae_Devosia_sp. | 0.7136770 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_D05-2_sp. | 0.6964526 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Rhizobiaceae_Allorhizobium-Neorhizobium-Pararhizobium-Rhizobium_sp. | 0.6423992 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Rhizobiaceae_Allorhizobium-Neorhizobium-Pararhizobium-Rhizobium_etli | 0.6206867 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Rhizobiaceae_Allorhizobium-Neorhizobium-Pararhizobium-Rhizobium_rhizogenes | 0.6286479 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Rhizobiaceae_Aminobacter_sp. | 0.6544200 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Rhizobiaceae_Mesorhizobium_plurifarium | 0.6019286 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Beijerinckiaceae_Bosea_sp. | 0.6265666 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Kaistiaceae_Kaistia_sp. | 0.5505405 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Beijerinckiaceae_sp. | 0.6011347 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Beijerinckiaceae_Methylocystis_sp. | 0.6065003 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Beijerinckiaceae_alphaI cluster_sp. | 0.5353337 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Beijerinckiaceae_Rhodoblastus_sp. | 0.7267078 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Beijerinckiaceae_Roseiarcus_sp. | 0.5785655 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Xanthobacteraceae_Pseudorhodoplanes_sp. | 0.7592489 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Xanthobacteraceae_Bradyrhizobium_iriomotense | 0.5882948 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Xanthobacteraceae_Nitrobacter_sp. | 0.5269758 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Xanthobacteraceae_Afipia_sp. | 0.5690086 | Both |
| Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Xanthobacteraceae_sp. | 0.6204676 | Both |
Assembly over time
These are taxa that ONLY appear after a certain time
point
Here’s probably a better way to show these taxa
Collaborator Carl Hjelmen put these together. He’s a phylogeny guy.
Anyway, Here are 2 versions - One showing the number of unique ASVs, the other showing the relative abundance values. I like these, and I think we could have both versions of the heatmaps plotted next to the trees. We will do this for bacteria also of course. But wanted your feedback…
