Malaysian palm oil restoration (soil microbes)


Experimental design

  • Five (5) plots of Malaysian palm oil plantation in various stages of conversion.
    • Active palm oil plot (0)
    • 1 year fallow (1)
    • 1 year fallow + 1 year managed (2)
    • 1 year fallow + 2 years managed (3)
    • 1 year fallow + 3 years managed (4)
  • 16 samples from each plot
  • For each sample we have ITS1-5.8S-ITS2 and full-length 16S

Sampling location map

ITS1-5.8S-ITS2 and full-length 16S sequenced on the new PacBio Revio platform using their Kinnex technique.

Taxonomy assigned with:

Bacteria – SILVA v 138.1 Eukaryotes – Eukaryome v 1.9





Initial results

Soil chemistry





Alpha-diversity

In all samples, we have 687 fungal and 11509 bacterial ASVs.

Fungi (all)

AMF

Bacteria

Richness by treatment

Richness by soil vars





Beta-diversity

Ordinations

Dispersion

GDM (Envir. vs community structure)





Important taxa (that drive community differences)

Determined using differential abundance testing (corncob) and Random Forest models. These taxa were identified by both methods.

Fungi

Bacteria





Networks

Network properties

Species richness vs network properties

taxa term estimate std_error df t_value pr_t
Bacteria (Intercept) 205.4647 17.4715 4.0273 11.7600 0.0003
Bacteria value 11.0781 23.2882 705.9975 0.4757 0.6344
Bacteria value:clustering_coeficent -34.9134 23.0893 706.0180 -1.5121 0.1310
Bacteria value:global_effic 11.7038 23.0892 705.9946 0.5069 0.6124
Bacteria value:max_degree 76.8657 26.6775 706.0495 2.8813 0.0041
Bacteria value:mean_betweenness 4.1376 22.8836 705.9940 0.1808 0.8566
Bacteria value:mean_closeness -14.6407 25.3160 705.9989 -0.5783 0.5632
Bacteria value:mean_coreness 56.0953 24.9320 706.0462 2.2499 0.0248
Bacteria value:mean_dist -36.7980 23.1115 706.0163 -1.5922 0.1118
Bacteria value:n_vertices 20.1276 23.1812 706.0001 0.8683 0.3855
Fungi (Intercept) 62.2544 5.5512 4.1884 11.2146 0.0003
Fungi value 11.7943 1.5817 706.6377 7.4566 0.0000
Fungi value:clustering_coeficent -3.5871 1.8450 706.0263 -1.9442 0.0523
Fungi value:global_effic -0.7820 1.8709 706.0098 -0.4180 0.6761
Fungi value:max_degree 0.6721 2.0622 705.9903 0.3259 0.7446
Fungi value:mean_betweenness 0.3084 1.9402 705.9949 0.1589 0.8738
Fungi value:mean_closeness -23.5850 2.2242 707.2417 -10.6038 0.0000
Fungi value:mean_coreness -0.2386 2.0256 705.9909 -0.1178 0.9063
Fungi value:mean_dist -3.4385 1.9520 706.0011 -1.7615 0.0786
Fungi value:n_vertices -0.1543 2.0216 705.9895 -0.0763 0.9392
Both (Intercept) 236.9404 24.3470 4.0708 9.7318 0.0006
Both value 23.7333 4.1294 706.2918 5.7474 0.0000
Both value:clustering_coeficent -85.9959 14.6821 706.4612 -5.8572 0.0000
Both value:global_effic 0.7194 5.4494 705.9966 0.1320 0.8950
Both value:max_degree -1.0820 4.5823 705.9964 -0.2361 0.8134
Both value:mean_betweenness 20.9102 6.2364 706.1315 3.3529 0.0008
Both value:mean_closeness -63.7216 10.8343 706.2910 -5.8815 0.0000
Both value:mean_coreness -0.1882 4.6691 705.9978 -0.0403 0.9679
Both value:mean_dist -68.6697 10.7391 706.3033 -6.3944 0.0000
Both value:n_vertices 7.1636 4.9459 706.0231 1.4484 0.1479

Hub taxa (key network influencers)

hub_taxon hub_score taxa
Fungi_Ascomycota_Dothideomycetes_Natipusillales_Natipusillaceae_unclassified_sp. 0.5250886 Fungi
Fungi_Ascomycota_Dothideomycetes_Botryosphaeriales_Botryosphaeriaceae_Lasiodiplodia_theobromae 0.7642418 Fungi
Fungi_Ascomycota_Sordariomycetes_Chaetosphaeriales_Chaetosphaeriaceae_Chloridium_sp. 0.7730463 Fungi
Fungi_Ascomycota_Sordariomycetes_Hypocreales_Stachybotryaceae_Paramyrothecium_roridum 0.6484516 Fungi
Fungi_Ascomycota_Sordariomycetes_Hypocreales_Hypocreaceae_Trichoderma_arundinaceum 1.0000000 Fungi
Fungi_Ascomycota_Sordariomycetes_Hypocreales_Nectriaceae_Fusarium_oxysporum 0.6768440 Fungi
Fungi_Ascomycota_Sordariomycetes_Hypocreales_Nectriaceae_Fusarium_sp. 0.5951088 Fungi
Bacteria_Planctomycetota_Phycisphaerae_Phycisphaerales_Phycisphaeraceae_AKYG587_sp. 0.6528509 Bacteria
Bacteria_Planctomycetota_Planctomycetes_Planctomycetales_Schlesneriaceae_Planctopirus_sp. 0.6780863 Bacteria
Bacteria_Planctomycetota_Planctomycetes_Pirellulales_Pirellulaceae_Blastopirellula_sp. 0.5507941 Bacteria
Bacteria_Planctomycetota_Planctomycetes_Pirellulales_Pirellulaceae_Pirellula_sp. 0.7123121 Bacteria
Bacteria_Planctomycetota_Planctomycetes_Pirellulales_Pirellulaceae_Pir4 lineage_sp. 0.5669084 Bacteria
Bacteria_Planctomycetota_Planctomycetes_Isosphaerales_Isosphaeraceae_Aquisphaera_sp. 0.6359722 Bacteria
Bacteria_Planctomycetota_Planctomycetes_Gemmatales_Gemmataceae_Fimbriiglobus_sp. 0.7229554 Bacteria
Bacteria_Verrucomicrobiota_Verrucomicrobiae_Pedosphaerales_Pedosphaeraceae_sp. 0.6310239 Bacteria
Bacteria_Verrucomicrobiota_Verrucomicrobiae_Pedosphaerales_Pedosphaeraceae_Pedosphaera_sp. 0.5668391 Bacteria
Bacteria_Verrucomicrobiota_Verrucomicrobiae_Pedosphaerales_Pedosphaeraceae_ADurb.Bin063-1_sp. 0.8778464 Bacteria
Bacteria_Verrucomicrobiota_Verrucomicrobiae_Chthoniobacterales_Chthoniobacteraceae_sp. 0.5154318 Bacteria
Bacteria_Verrucomicrobiota_Verrucomicrobiae_Chthoniobacterales_Chthoniobacteraceae_Candidatus Udaeobacter_sp. 0.5689730 Bacteria
Bacteria_Chloroflexi_Chloroflexia_Thermomicrobiales_JG30-KF-CM45_sp. 0.7645676 Bacteria
Bacteria_Chloroflexi_Chloroflexia_Chloroflexales_Roseiflexaceae_sp. 0.6392384 Bacteria
Bacteria_Chloroflexi_Anaerolineae_Anaerolineales_Anaerolineaceae_UTCFX1_sp. 0.7414524 Bacteria
Bacteria_Chloroflexi_Ktedonobacteria_Ktedonobacterales_Ktedonobacteraceae_FCPS473_sp. 0.6808975 Bacteria
Bacteria_Chloroflexi_Ktedonobacteria_Ktedonobacterales_Ktedonobacteraceae_HSB OF53-F07_sp. 0.6179238 Bacteria
Bacteria_Bacteroidota_Kryptonia_Kryptoniales_BSV26_sp. 0.6756744 Bacteria
Bacteria_Bacteroidota_Bacteroidia_Flavobacteriales_NS9 marine group_sp. 0.6033936 Bacteria
Bacteria_Bacteroidota_Bacteroidia_Chitinophagales_Chitinophagaceae_UTBCD1_sp. 0.6518781 Bacteria
Bacteria_Spirochaetota_Spirochaetia_Spirochaetales_Spirochaetaceae_Spirochaeta_sp. 0.5262598 Bacteria
Bacteria_Entotheonellaeota_Entotheonellia_Entotheonellales_Entotheonellaceae_sp. 0.5680486 Bacteria
Bacteria_Methylomirabilota_Methylomirabilia_Rokubacteriales_WX65_sp. 0.7602448 Bacteria
Bacteria_Actinobacteriota_Thermoleophilia_Solirubrobacterales_Solirubrobacteraceae_sp. 0.7082722 Bacteria
Bacteria_Actinobacteriota_Thermoleophilia_Solirubrobacterales_Solirubrobacteraceae_Solirubrobacter_sp. 0.6237417 Bacteria
Bacteria_Actinobacteriota_Acidimicrobiia_Microtrichales_Ilumatobacteraceae_Ilumatobacter_sp. 0.6474581 Bacteria
Bacteria_Actinobacteriota_Acidimicrobiia_Microtrichales_Ilumatobacteraceae_CL500-29 marine group_sp. 0.5087122 Bacteria
Bacteria_Actinobacteriota_Actinobacteria_Micrococcales_Microbacteriaceae_Agromyces_sp. 0.6420621 Bacteria
Bacteria_Actinobacteriota_Actinobacteria_Micrococcales_Intrasporangiaceae_Intrasporangium_sp. 0.5781812 Bacteria
Bacteria_Actinobacteriota_Actinobacteria_Streptomycetales_Streptomycetaceae_Streptomyces_glauciniger 0.6585305 Bacteria
Bacteria_Actinobacteriota_Actinobacteria_Streptomycetales_Streptomycetaceae_Streptomyces_sp. 0.5086589 Bacteria
Bacteria_Actinobacteriota_Actinobacteria_Micromonosporales_Micromonosporaceae_Actinoplanes_sp. 0.6330562 Bacteria
Bacteria_Actinobacteriota_Actinobacteria_Micromonosporales_Micromonosporaceae_Hamadaea_sp. 0.6003769 Bacteria
Bacteria_Actinobacteriota_Actinobacteria_Micromonosporales_Micromonosporaceae_Dactylosporangium_sp. 0.6118131 Bacteria
Bacteria_Actinobacteriota_Actinobacteria_Frankiales_Acidothermaceae_Acidothermus_sp. 1.0000000 Bacteria
Bacteria_Firmicutes_Bacilli_Bacillales_Bacillaceae_Bacillus_megaterium 0.6921962 Bacteria
Bacteria_Myxococcota_Myxococcia_Myxococcales_27F-1492R_sp. 0.5711110 Bacteria
Bacteria_Myxococcota_Myxococcia_Myxococcales_Anaeromyxobacteraceae_Anaeromyxobacter_sp. 0.5248945 Bacteria
Bacteria_Myxococcota_Polyangia_Polyangiales_Polyangiaceae_Pajaroellobacter_sp. 0.8365949 Bacteria
Bacteria_Acidobacteriota_Holophagae_Holophagales_Holophagaceae_Holophaga_sp. 0.9566504 Bacteria
Bacteria_Acidobacteriota_Blastocatellia_Blastocatellales_Blastocatellaceae_sp. 0.5911481 Bacteria
Bacteria_Acidobacteriota_Acidobacteriae_Solibacterales_Solibacteraceae_Candidatus Solibacter_sp. 0.5990709 Bacteria
Bacteria_Acidobacteriota_Acidobacteriae_Acidobacteriales_Acidobacteriaceae (Subgroup 1)_Occallatibacter_sp. 0.5803394 Bacteria
Bacteria_Acidobacteriota_Acidobacteriae_Acidobacteriales_Acidobacteriaceae (Subgroup 1)_sp. 0.5329977 Bacteria
Bacteria_Acidobacteriota_Acidobacteriae_Acidobacteriales_Koribacteraceae_Candidatus Koribacter_sp. 0.7054082 Bacteria
Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Rhodanobacteraceae_Mizugakiibacter_sp. 0.5599828 Bacteria
Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Rhodanobacteraceae_Rudaea_sp. 0.5034123 Bacteria
Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Rhodanobacteraceae_Dokdonella_sp. 0.5649033 Bacteria
Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Legionellaceae_Legionella_sp. 0.5885422 Bacteria
Bacteria_Proteobacteria_Gammaproteobacteria_Steroidobacterales_Woeseiaceae_JTB255 marine benthic group_sp. 0.9426239 Bacteria
Bacteria_Proteobacteria_Gammaproteobacteria_Steroidobacterales_Steroidobacteraceae_Steroidobacter_sp. 0.9774622 Bacteria
Bacteria_Proteobacteria_Gammaproteobacteria_Gammaproteobacteria Incertae Sedis_Unknown Family_Acidibacter_sp. 0.7684594 Bacteria
Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Alcaligenaceae_Bordetella_sp. 0.5506756 Bacteria
Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Gallionellaceae_Candidatus Nitrotoga_sp. 0.5433830 Bacteria
Bacteria_Proteobacteria_Alphaproteobacteria_Acetobacterales_Acetobacteraceae_Acidisoma_sp. 0.5188143 Bacteria
Bacteria_Proteobacteria_Alphaproteobacteria_Acetobacterales_Acetobacteraceae_Acidicaldus_sp. 0.5228605 Bacteria
Bacteria_Proteobacteria_Alphaproteobacteria_Reyranellales_Reyranellaceae_sp. 0.6321139 Bacteria
Bacteria_Proteobacteria_Alphaproteobacteria_Rhodospirillales_AEGEAN-169 marine group_sp. 0.5476922 Bacteria
Bacteria_Proteobacteria_Alphaproteobacteria_Elsterales_Elsteraceae_sp. 0.5276454 Bacteria
Bacteria_Proteobacteria_Alphaproteobacteria_Dongiales_Dongiaceae_Dongia_soli 0.5464550 Bacteria
Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Hyphomonadaceae_Hirschia_sp. 0.5159542 Bacteria
Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Altererythrobacter_sp. 0.5391155 Bacteria
Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Ellin6055_sp. 0.5568949 Bacteria
Bacteria_Proteobacteria_Alphaproteobacteria_Micropepsales_Micropepsaceae_sp. 0.6549967 Bacteria
Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Caulobacteraceae_sp. 0.5796436 Bacteria
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Hyphomicrobiaceae_Hyphomicrobium_sp. 0.6536071 Bacteria
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Hyphomicrobiaceae_Pedomicrobium_sp. 0.7082306 Bacteria
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Hyphomicrobiaceae_Hyphomicrobium_denitrificans 0.5598463 Bacteria
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Rhizobiaceae_Ensifer_adhaerens 0.6678553 Bacteria
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Rhizobiaceae_Allorhizobium-Neorhizobium-Pararhizobium-Rhizobium_sp. 0.5573782 Bacteria
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Rhizobiaceae_Mesorhizobium_sp. 0.8431483 Bacteria
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Beijerinckiaceae_Roseiarcus_sp. 0.8394126 Bacteria
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Xanthobacteraceae_Pseudorhodoplanes_sp. 0.6936802 Bacteria
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Xanthobacteraceae_Bradyrhizobium_sp. 0.5291697 Bacteria
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Xanthobacteraceae_sp. 0.6708299 Bacteria
Fungi_Ascomycota_Sordariomycetes_Amplistromatales_Amplistromataceae_unclassified_sp. 0.7046291 Both
Fungi_Ascomycota_Dothideomycetes_Jahnulales_Aliquandostipitaceae_unclassified_sp. 0.5429062 Both
Fungi_Ascomycota_Dothideomycetes_Pleosporales_Lophiostomataceae_Lophiostoma_sp. 0.5267953 Both
Fungi_Ascomycota_Dothideomycetes_Pleosporales_Dacampiaceae_Aaosphaeria_arxii 0.6422840 Both
Fungi_Ascomycota_Dothideomycetes_Pleosporales_Roussoellaceae_Neoroussoella_solani 0.7196011 Both
Fungi_Ascomycota_Dothideomycetes_Pleosporales_Didymosphaeriaceae_Paraconiothyrium_brasiliense 0.6730466 Both
Fungi_Ascomycota_Dothideomycetes_Pleosporales_Pyrenochaetopsidaceae_Pyrenochaetopsis_sp. 0.5211027 Both
Fungi_Ascomycota_Dothideomycetes_Pleosporales_Pleosporaceae_Bipolaris_sorokiniana 0.7305181 Both
Fungi_Ascomycota_Dothideomycetes_Pleosporales_Pleosporaceae_Curvularia_papendorfii 0.7611368 Both
Fungi_Ascomycota_Sordariomycetes_Coronophorales_Ceratostomataceae_Melanospora_sp. 0.5258862 Both
Fungi_Ascomycota_Orbiliomycetes_Orbiliales_Orbiliaceae_Arthrobotrys_sp. 0.6541083 Both
Fungi_Basidiomycota_Atractiellomycetes_Atractiellales_Hoehnelomycetaceae_unclassified_sp. 0.7331107 Both
Fungi_Mortierellomycota_unclassified_unclassified_unclassified_unclassified_sp. 0.7478376 Both
Fungi_Mucoromycota_Endogonomycetes_Langduoales_Langduoaceae_Langduoa_sp. 0.7866005 Both
Fungi_Basidiomycota_Tremellomycetes_Trichosporonales_Trichosporonaceae_Apiotrichum_porosum 0.6123476 Both
Fungi_Basidiomycota_Tremellomycetes_Tremellales_Trimorphomycetaceae_Saitozyma_sp. 0.7412364 Both
Fungi_Mortierellomycota_Mortierellomycetes_Mortierellales_Mortierellaceae_Actinomortierella_wolfii 0.5634334 Both
Fungi_Mortierellomycota_Mortierellomycetes_Mortierellales_Mortierellaceae_Actinomortierella_sp. 0.7253692 Both
Fungi_Mortierellomycota_Mortierellomycetes_Mortierellales_Mortierellaceae_Actinomortierella_ambigua 0.5496879 Both
Fungi_Basidiomycota_Geminibasidiomycetes_Geminibasidiales_Geminibasidiaceae_Geminibasidium_sp. 0.8684836 Both
Fungi_Basidiomycota_Agaricomycetes_Agaricales_Pluteaceae_Volvariella_volvacea 0.5490255 Both
Fungi_Basidiomycota_Agaricomycetes_Agaricales_Stephanosporaceae_Myriococcum_praecox 0.5946410 Both
Fungi_Basidiomycota_Agaricomycetes_Agaricales_Psathyrellaceae_Parasola_sp. 0.5226239 Both
Fungi_Basidiomycota_Agaricomycetes_Agaricales_Psathyrellaceae_Coprinopsis_cinerea 0.6200095 Both
Fungi_Basidiomycota_Agaricomycetes_Agaricales_Agaricales_fam_incertae_sedis_Lepista_sordida 0.6083560 Both
Fungi_Basidiomycota_Agaricomycetes_Agaricales_Agaricaceae_Lycoperdon_sp. 0.7132200 Both
Fungi_Basidiomycota_Agaricomycetes_Agaricales_Omphalotaceae_Gymnopus_pseudomphalodes 0.6067528 Both
Fungi_Chytridiomycota_Cladochytriomycetes_Cladochytriales_Septochytriaceae_unclassified_sp. 0.7267901 Both
Fungi_Glomeromycota_Glomeromycetes_Glomerales_Glomeraceae_Sclerocystis_sp. 0.7229882 Both
Fungi_Rozellomycota_Rozellomycota_cl_incertae_sedis_GS11_unclassified_unclassified_sp. 0.9292242 Both
Fungi_Chytridiomycota_Rhizophydiomycetes_Rhizophydiales_Terramycetaceae_Boothiomyces_sp. 0.5688090 Both
Fungi_Chytridiomycota_Rhizophydiomycetes_Rhizophydiales_Terramycetaceae_Terramyces_sp. 0.5935302 Both
Fungi_Chytridiomycota_Rhizophydiomycetes_Rhizophydiales_Angulomycetaceae_Angulomyces_argentinensis 0.7505196 Both
Fungi_Ascomycota_Sordariomycetes_Branch06_unclassified_unclassified_sp. 1.0000000 Both
Fungi_Ascomycota_Eurotiomycetes_Chaetothyriales_Cyphellophoraceae_Cyphellophora_sp. 0.6533730 Both
Fungi_Ascomycota_Eurotiomycetes_Eurotiales_Trichocomaceae_Thermomyces_lanuginosus 0.9377234 Both
Fungi_Ascomycota_Eurotiomycetes_Eurotiales_Aspergillaceae_Penicillium_citrinum 0.7015316 Both
Fungi_Ascomycota_Eurotiomycetes_Eurotiales_Aspergillaceae_sp. 0.7704036 Both
Fungi_Ascomycota_Eurotiomycetes_Eurotiales_Aspergillaceae_Penicillium_subrubescens 0.6007208 Both
Fungi_Ascomycota_Eurotiomycetes_Eurotiales_Aspergillaceae_Penicillium_sp. 0.5173269 Both
Fungi_Ascomycota_Eurotiomycetes_Eurotiales_Aspergillaceae_Aspergillus_fumigatus 0.6120729 Both
Fungi_Ascomycota_Eurotiomycetes_Eurotiales_Aspergillaceae_Aspergillus_niger 0.8611670 Both
Fungi_Ascomycota_Eurotiomycetes_Eurotiales_Trichocomaceae_Talaromyces_sp. 0.6741653 Both
Fungi_Ascomycota_Eurotiomycetes_Eurotiales_Trichocomaceae_Talaromyces_adpressus 0.7177613 Both
Fungi_Ascomycota_Dothideomycetes_Botryosphaeriales_Botryosphaeriaceae_Lasiodiplodia_sp. 0.5527286 Both
Fungi_Ascomycota_Dothideomycetes_Botryosphaeriales_Botryosphaeriaceae_Lasiodiplodia_theobromae 0.7815847 Both
Fungi_Ascomycota_Sordariomycetes_Xylariales_Microdochiaceae_Microdochium_bolleyi 0.6983496 Both
Fungi_Ascomycota_Sordariomycetes_Xylariales_unclassified_unclassified_sp. 0.6457272 Both
Fungi_Ascomycota_Sordariomycetes_Amphisphaeriales_Sporocadaceae_Neopestalotiopsis_clavispora 0.7375893 Both
Fungi_Ascomycota_Sordariomycetes_Amphisphaeriales_Sporocadaceae_sp. 0.7015620 Both
Fungi_Ascomycota_Sordariomycetes_Myrmecridiales_Myrmecridiaceae_Myrmecridium_phragmitis 0.7614874 Both
Fungi_Ascomycota_Sordariomycetes_Myrmecridiales_Myrmecridiaceae_Myrmecridium_sp. 0.7135401 Both
Fungi_Ascomycota_Sordariomycetes_Chaetosphaeriales_Chaetosphaeriaceae_Chaetosphaeria_sp. 0.6607343 Both
Fungi_Ascomycota_Sordariomycetes_Chaetosphaeriales_Chaetosphaeriaceae_Chloridium_sp. 0.8280065 Both
Fungi_Ascomycota_Sordariomycetes_Pisorisporiales_Pisorisporiaceae_Candelabrum(Fungi)_sp. 0.5652245 Both
Fungi_Ascomycota_Sordariomycetes_Sordariales_Sordariaceae_sp. 0.6372934 Both
Fungi_Ascomycota_Sordariomycetes_Sordariales_Sordariaceae_Sordaria_macrospora 0.9685941 Both
Fungi_Ascomycota_Sordariomycetes_Sordariales_Chaetomiaceae_Mycothermus_sp. 0.9114539 Both
Fungi_Ascomycota_Sordariomycetes_Sordariales_Chaetomiaceae_sp. 0.5375970 Both
Fungi_Ascomycota_Sordariomycetes_Sordariales_Podosporaceae_Cladorrhinum_sp. 0.7498337 Both
Fungi_Ascomycota_Sordariomycetes_Sordariales_Podosporaceae_sp. 0.6592825 Both
Fungi_Ascomycota_Sordariomycetes_Sordariales_Podosporaceae_Triangularia_verruculosa 0.7615832 Both
Fungi_Ascomycota_Sordariomycetes_Sordariales_Neoschizotheciaceae_unclassified_sp. 0.6430815 Both
Fungi_Ascomycota_Sordariomycetes_Sordariales_Schizotheciaceae_Lundqvistomyces_sp. 0.7395071 Both
Fungi_Ascomycota_Sordariomycetes_Glomerellales_Plectosphaerellaceae_Gibellulopsis_nigrescens 0.5647111 Both
Fungi_Ascomycota_Sordariomycetes_Glomerellales_Plectosphaerellaceae_Furcasterigmium_sp. 0.8152954 Both
Fungi_Ascomycota_Sordariomycetes_Glomerellales_Plectosphaerellaceae_sp. 0.5937595 Both
Fungi_Ascomycota_Sordariomycetes_Glomerellales_Plectosphaerellaceae_Gibellulopsis_sp. 0.5685677 Both
Fungi_Ascomycota_Sordariomycetes_Microascales_Microascaceae_Lophotrichus_fimeti 0.6015148 Both
Fungi_Ascomycota_Sordariomycetes_Microascales_Microascaceae_Rhinocladium_lesnei 0.5389658 Both
Fungi_Ascomycota_Sordariomycetes_Microascales_Microascaceae_Scedosporium_dehoogii 0.8778437 Both
Fungi_Ascomycota_Sordariomycetes_Microascales_Microascaceae_Pseudallescheria_boydii 0.6049470 Both
Fungi_Ascomycota_Sordariomycetes_Microascales_Microascaceae_sp. 0.7242067 Both
Fungi_Ascomycota_Sordariomycetes_Microascales_Ceratocystidaceae_Thielaviopsis_sp. 0.6192192 Both
Fungi_Ascomycota_Sordariomycetes_Hypocreales_Bionectriaceae_Acremonium_polychromum 0.6378176 Both
Fungi_Ascomycota_Sordariomycetes_Hypocreales_Bionectriaceae_Acremonium_sp. 0.9892260 Both
Fungi_Ascomycota_Sordariomycetes_Hypocreales_Stachybotryaceae_Paramyrothecium_roridum 0.9969732 Both
Fungi_Ascomycota_Sordariomycetes_Hypocreales_Hypocreaceae_Trichoderma_viride 0.5857639 Both
Fungi_Ascomycota_Sordariomycetes_Hypocreales_Hypocreaceae_Trichoderma_asperellum 0.5817185 Both
Fungi_Ascomycota_Sordariomycetes_Hypocreales_Hypocreaceae_Trichoderma_sp. 0.5889289 Both
Fungi_Ascomycota_Sordariomycetes_Hypocreales_Hypocreaceae_Trichoderma_arundinaceum 0.7666840 Both
Fungi_Ascomycota_Sordariomycetes_Hypocreales_Hypocreaceae_Trichoderma_lixii 0.5286874 Both
Fungi_Ascomycota_Sordariomycetes_Hypocreales_Hypocreaceae_Trichoderma_harzianum 0.5546266 Both
Fungi_Ascomycota_Sordariomycetes_Hypocreales_Hypocreaceae_Trichoderma_virens 0.6333109 Both
Fungi_Ascomycota_Sordariomycetes_Hypocreales_Clavicipitaceae_Pochonia_chlamydosporia 0.7533927 Both
Fungi_Ascomycota_Sordariomycetes_Hypocreales_sp. 0.5775064 Both
Fungi_Ascomycota_Sordariomycetes_Hypocreales_Bionectriaceae_Clonostachys_rosea 0.6638425 Both
Fungi_Ascomycota_Sordariomycetes_Hypocreales_Bionectriaceae_Clonostachys_sp. 0.5632046 Both
Fungi_Ascomycota_Sordariomycetes_Hypocreales_Bionectriaceae_sp. 0.8738139 Both
Fungi_Ascomycota_Sordariomycetes_Hypocreales_Bionectriaceae_Clonostachys_rossmaniae 0.5761030 Both
Fungi_Ascomycota_Sordariomycetes_Hypocreales_Nectriaceae_Bisifusarium_dimerum 0.8744799 Both
Fungi_Ascomycota_Sordariomycetes_Hypocreales_Nectriaceae_Gibberella_intricans 0.8857990 Both
Fungi_Ascomycota_Sordariomycetes_Hypocreales_Nectriaceae_Fusarium_oxysporum 0.7856011 Both
Fungi_Ascomycota_Sordariomycetes_Hypocreales_Nectriaceae_Mariannaea_elegans 0.5257288 Both
Fungi_Ascomycota_Sordariomycetes_Hypocreales_Nectriaceae_Mariannaea_sp. 0.8800379 Both
Fungi_Ascomycota_Sordariomycetes_Hypocreales_Nectriaceae_sp. 0.5297859 Both
Bacteria_Planctomycetota_Phycisphaerae_Phycisphaerales_Phycisphaeraceae_sp. 0.5900907 Both
Bacteria_Planctomycetota_Phycisphaerae_Phycisphaerales_Phycisphaeraceae_AKYG587_sp. 0.6185250 Both
Bacteria_Planctomycetota_Phycisphaerae_Tepidisphaerales_CPla-3 termite group_sp. 0.7414633 Both
Bacteria_Planctomycetota_Planctomycetes_Pirellulales_Pirellulaceae_Blastopirellula_sp. 0.8265802 Both
Bacteria_Planctomycetota_Planctomycetes_Pirellulales_Pirellulaceae_Pir2 lineage_sp. 0.6228091 Both
Bacteria_Planctomycetota_Planctomycetes_Isosphaerales_Isosphaeraceae_Paludisphaera_sp. 0.6546481 Both
Bacteria_Planctomycetota_Planctomycetes_Isosphaerales_Isosphaeraceae_Aquisphaera_sp. 0.8311003 Both
Bacteria_Planctomycetota_Planctomycetes_Isosphaerales_Isosphaeraceae_Candidatus Nostocoida_sp. 0.7419301 Both
Bacteria_Planctomycetota_Planctomycetes_Gemmatales_Gemmataceae_Fimbriiglobus_sp. 0.7377912 Both
Bacteria_Planctomycetota_Planctomycetes_Gemmatales_Gemmataceae_sp. 0.5308540 Both
Bacteria_Verrucomicrobiota_Verrucomicrobiae_Opitutales_Opitutaceae_Lacunisphaera_sp. 0.5872685 Both
Bacteria_Verrucomicrobiota_Verrucomicrobiae_Pedosphaerales_Pedosphaeraceae_SH3-11_sp. 0.6003027 Both
Bacteria_Verrucomicrobiota_Verrucomicrobiae_Pedosphaerales_Pedosphaeraceae_sp. 0.6138802 Both
Bacteria_Verrucomicrobiota_Verrucomicrobiae_Pedosphaerales_Pedosphaeraceae_Pedosphaera_sp. 0.7732118 Both
Bacteria_Verrucomicrobiota_Verrucomicrobiae_Pedosphaerales_Pedosphaeraceae_ADurb.Bin063-1_sp. 0.7390338 Both
Bacteria_Verrucomicrobiota_Verrucomicrobiae_Verrucomicrobiales_Rubritaleaceae_Luteolibacter_sp. 0.9118350 Both
Bacteria_Verrucomicrobiota_Verrucomicrobiae_Verrucomicrobiales_Verrucomicrobiaceae_Roseimicrobium_sp. 0.6619478 Both
Bacteria_Verrucomicrobiota_Verrucomicrobiae_Chthoniobacterales_Terrimicrobiaceae_FukuN18 freshwater group_sp. 0.6274299 Both
Bacteria_Verrucomicrobiota_Verrucomicrobiae_Chthoniobacterales_Chthoniobacteraceae_Chthoniobacter_sp. 0.5666482 Both
Bacteria_Verrucomicrobiota_Verrucomicrobiae_Chthoniobacterales_Chthoniobacteraceae_sp. 0.6296069 Both
Bacteria_Verrucomicrobiota_Verrucomicrobiae_Chthoniobacterales_Chthoniobacteraceae_Candidatus Udaeobacter_sp. 0.8468636 Both
Bacteria_Armatimonadota_Fimbriimonadia_Fimbriimonadales_Fimbriimonadaceae_sp. 0.6653863 Both
Bacteria_Armatimonadota_Chthonomonadetes_Chthonomonadales_Chthonomonadaceae_Chthonomonas_sp. 0.7211429 Both
Bacteria_Chloroflexi_Chloroflexia_Thermomicrobiales_AKYG1722_sp. 0.9528825 Both
Bacteria_Chloroflexi_Chloroflexia_Thermomicrobiales_JG30-KF-CM45_sp. 0.5686468 Both
Bacteria_Chloroflexi_Chloroflexia_Chloroflexales_Roseiflexaceae_sp. 0.6257882 Both
Bacteria_Chloroflexi_Anaerolineae_Caldilineales_Caldilineaceae_Litorilinea_sp. 0.6642121 Both
Bacteria_Chloroflexi_Anaerolineae_Anaerolineales_Anaerolineaceae_UTCFX1_sp. 0.6537033 Both
Bacteria_Chloroflexi_Anaerolineae_Anaerolineales_Anaerolineaceae_Anaerolinea_sp. 0.6479771 Both
Bacteria_Chloroflexi_Ktedonobacteria_Ktedonobacterales_JG30-KF-AS9_sp. 0.8947180 Both
Bacteria_Chloroflexi_Ktedonobacteria_Ktedonobacterales_Ktedonobacteraceae_FCPS473_sp. 0.5615108 Both
Bacteria_Chloroflexi_Ktedonobacteria_Ktedonobacterales_Ktedonobacteraceae_1959-1_sp. 0.5545937 Both
Bacteria_Chloroflexi_Ktedonobacteria_Ktedonobacterales_Ktedonobacteraceae_1921-2_sp. 0.8597404 Both
Bacteria_Patescibacteria_Saccharimonadia_Saccharimonadales_WWH38_sp. 0.7683242 Both
Bacteria_Patescibacteria_Saccharimonadia_Saccharimonadales_LWQ8_sp. 0.6120889 Both
Bacteria_Fibrobacterota_Fibrobacteria_Fibrobacterales_Fibrobacteraceae_possible genus 04_sp. 0.5613976 Both
Bacteria_Dependentiae_Babeliae_Babeliales_Babeliaceae_sp. 0.8066400 Both
Bacteria_Bacteroidota_Kryptonia_Kryptoniales_BSV26_sp. 0.6008242 Both
Bacteria_Bacteroidota_Bacteroidia_Cytophagales_Microscillaceae_sp. 0.6867930 Both
Bacteria_Bacteroidota_Bacteroidia_Cytophagales_Microscillaceae_Chryseolinea_sp. 0.5879348 Both
Bacteria_Bacteroidota_Bacteroidia_Sphingobacteriales_AKYH767_sp. 0.6216450 Both
Bacteria_Bacteroidota_Bacteroidia_Sphingobacteriales_CWT CU03-E12_sp. 0.8642699 Both
Bacteria_Bacteroidota_Bacteroidia_Sphingobacteriales_Sphingobacteriaceae_Mucilaginibacter_sp. 0.6724443 Both
Bacteria_Bacteroidota_Bacteroidia_Sphingobacteriales_Sphingobacteriaceae_sp. 0.7321172 Both
Bacteria_Bacteroidota_Bacteroidia_Flavobacteriales_NS9 marine group_sp. 0.8908158 Both
Bacteria_Bacteroidota_Bacteroidia_Flavobacteriales_Flavobacteriaceae_Flavobacterium_sp. 0.5708077 Both
Bacteria_Bacteroidota_Bacteroidia_Chitinophagales_Saprospiraceae_sp. 0.5739203 Both
Bacteria_Bacteroidota_Bacteroidia_Chitinophagales_37-13_sp. 0.5914228 Both
Bacteria_Bacteroidota_Bacteroidia_Chitinophagales_Chitinophagaceae_Edaphobaculum_sp. 0.6204989 Both
Bacteria_Bacteroidota_Bacteroidia_Chitinophagales_Chitinophagaceae_Dinghuibacter_sp. 0.8317872 Both
Bacteria_Bacteroidota_Bacteroidia_Chitinophagales_Chitinophagaceae_Filimonas_sp. 0.6289735 Both
Bacteria_Bacteroidota_Bacteroidia_Chitinophagales_Chitinophagaceae_Niveitalea_solisilvae 0.6433665 Both
Bacteria_Bacteroidota_Bacteroidia_Chitinophagales_Chitinophagaceae_Flavisolibacter_sp. 0.7158232 Both
Bacteria_Bacteroidota_Bacteroidia_Chitinophagales_Chitinophagaceae_Flavihumibacter_sp. 0.7894636 Both
Bacteria_Bacteroidota_Bacteroidia_Chitinophagales_Chitinophagaceae_Flavitalea_sp. 0.9495284 Both
Bacteria_Bacteroidota_Bacteroidia_Chitinophagales_Chitinophagaceae_UTBCD1_sp. 0.6636446 Both
Bacteria_Bacteroidota_Bacteroidia_Chitinophagales_Chitinophagaceae_Terrimonas_sp. 0.6129794 Both
Bacteria_Spirochaetota_Spirochaetia_Spirochaetales_Spirochaetaceae_Spirochaeta 2_aurantia 0.5481425 Both
Bacteria_Spirochaetota_Spirochaetia_Spirochaetales_Spirochaetaceae_Spirochaeta_sp. 0.5666259 Both
Bacteria_Gemmatimonadota_Gemmatimonadetes_Gemmatimonadales_Gemmatimonadaceae_sp. 0.6720141 Both
Bacteria_Entotheonellaeota_Entotheonellia_Entotheonellales_Entotheonellaceae_sp. 0.6843877 Both
Bacteria_Nitrospirota_Nitrospiria_Nitrospirales_Nitrospiraceae_Nitrospira_sp. 0.6072210 Both
Bacteria_Cyanobacteria_Vampirivibrionia_Vampirovibrionales_Vampirovibrionaceae_Vampirovibrio_sp. 0.6656769 Both
Bacteria_Cyanobacteria_Vampirivibrionia_Obscuribacterales_Obscuribacteraceae_sp. 0.5667396 Both
Bacteria_Cyanobacteria_Cyanobacteriia_Cyanobacteriales_Nostocaceae_sp. 0.8141584 Both
Bacteria_Desulfobacterota_Desulfovibrionia_Desulfovibrionales_Desulfovibrionaceae_Desulfovibrio_putealis 0.6216997 Both
Bacteria_Latescibacterota_Latescibacteria_Latescibacterales_Latescibacteraceae_sp. 0.5380977 Both
Bacteria_Desulfobacterota_Syntrophorhabdia_Syntrophorhabdales_Syntrophorhabdaceae_Syntrophorhabdus_sp. 0.5296889 Both
Bacteria_Methylomirabilota_Methylomirabilia_Methylomirabilales_Methylomirabilaceae_Sh765B-TzT-35_sp. 0.6038877 Both
Bacteria_Methylomirabilota_Methylomirabilia_Rokubacteriales_WX65_sp. 0.7537479 Both
Bacteria_Actinobacteriota_Thermoleophilia_Solirubrobacterales_Solirubrobacteraceae_JCM 18997_sp. 0.7076135 Both
Bacteria_Actinobacteriota_Thermoleophilia_Solirubrobacterales_Solirubrobacteraceae_sp. 0.5893799 Both
Bacteria_Actinobacteriota_Thermoleophilia_Solirubrobacterales_Solirubrobacteraceae_Conexibacter_sp. 0.6457526 Both
Bacteria_Actinobacteriota_Thermoleophilia_Solirubrobacterales_Solirubrobacteraceae_Solirubrobacter_sp. 0.5737984 Both
Bacteria_Actinobacteriota_Acidimicrobiia_Microtrichales_Microtrichaceae_sp. 0.5733287 Both
Bacteria_Actinobacteriota_Acidimicrobiia_Microtrichales_Ilumatobacteraceae_CL500-29 marine group_sp. 0.6756013 Both
Bacteria_Actinobacteriota_Acidimicrobiia_Microtrichales_Ilumatobacteraceae_sp. 0.5799001 Both
Bacteria_Actinobacteriota_Actinobacteria_Streptosporangiales_Thermomonosporaceae_Thermobispora_bispora 0.6852957 Both
Bacteria_Actinobacteriota_Actinobacteria_Pseudonocardiales_Pseudonocardiaceae_Amycolatopsis_sp. 0.6642619 Both
Bacteria_Actinobacteriota_Actinobacteria_Pseudonocardiales_Pseudonocardiaceae_Actinophytocola_sp. 0.5753832 Both
Bacteria_Actinobacteriota_Actinobacteria_Pseudonocardiales_Pseudonocardiaceae_Pseudonocardia_sp. 0.9059811 Both
Bacteria_Actinobacteriota_Actinobacteria_Corynebacteriales_Nocardiaceae_Rhodococcus_sp. 0.6039871 Both
Bacteria_Actinobacteriota_Actinobacteria_Corynebacteriales_Nocardiaceae_Nocardia_sp. 0.5682788 Both
Bacteria_Actinobacteriota_Actinobacteria_Corynebacteriales_Mycobacteriaceae_Mycobacterium_peregrinum 0.7414431 Both
Bacteria_Actinobacteriota_Actinobacteria_Corynebacteriales_Mycobacteriaceae_Mycobacterium_rhodesiae 0.7020729 Both
Bacteria_Actinobacteriota_Actinobacteria_Micrococcales_Microbacteriaceae_Lysinimonas_sp. 0.5774825 Both
Bacteria_Actinobacteriota_Actinobacteria_Micrococcales_Microbacteriaceae_Microbacterium_sp. 0.6256553 Both
Bacteria_Actinobacteriota_Actinobacteria_Micrococcales_Microbacteriaceae_Agromyces_sp. 0.7448880 Both
Bacteria_Actinobacteriota_Actinobacteria_Micrococcales_Demequinaceae_Demequina_sp. 0.5685339 Both
Bacteria_Actinobacteriota_Actinobacteria_Micrococcales_Intrasporangiaceae_Intrasporangium_sp. 0.8652686 Both
Bacteria_Actinobacteriota_Actinobacteria_Micrococcales_Intrasporangiaceae_Oryzihumus_leptocrescens 0.6661248 Both
Bacteria_Actinobacteriota_Actinobacteria_Micrococcales_Promicromonosporaceae_Cellulosimicrobium_cellulans 0.5442927 Both
Bacteria_Actinobacteriota_Actinobacteria_Micrococcales_Cellulomonadaceae_Cellulomonas_sp. 0.6785901 Both
Bacteria_Actinobacteriota_Actinobacteria_Streptomycetales_Streptomycetaceae_Streptomyces_lannensis 0.7099789 Both
Bacteria_Actinobacteriota_Actinobacteria_Streptomycetales_Streptomycetaceae_Streptomyces_griseochromogenes 0.6716114 Both
Bacteria_Actinobacteriota_Actinobacteria_Streptomycetales_Streptomycetaceae_Kitasatospora_aureofaciens 0.6382575 Both
Bacteria_Actinobacteriota_Actinobacteria_Frankiales_Frankiaceae_Frankia_sp. 0.5747385 Both
Bacteria_Actinobacteriota_Actinobacteria_Frankiales_Frankiaceae_Jatrophihabitans_sp. 0.6906644 Both
Bacteria_Actinobacteriota_Actinobacteria_Catenulisporales_Actinospicaceae_Actinospica_sp. 0.7245869 Both
Bacteria_Actinobacteriota_Actinobacteria_Propionibacteriales_Nocardioidaceae_Kribbella_sp. 0.8071332 Both
Bacteria_Actinobacteriota_Actinobacteria_Micromonosporales_Micromonosporaceae_Actinoplanes_sp. 0.6104699 Both
Bacteria_Actinobacteriota_Actinobacteria_Micromonosporales_Micromonosporaceae_Phytohabitans_sp. 0.6871333 Both
Bacteria_Actinobacteriota_Actinobacteria_Micromonosporales_Micromonosporaceae_Hamadaea_sp. 0.7141550 Both
Bacteria_Actinobacteriota_Actinobacteria_Micromonosporales_Micromonosporaceae_Asanoa_sp. 0.7730383 Both
Bacteria_Actinobacteriota_Actinobacteria_Micromonosporales_Micromonosporaceae_Verrucosispora_sp. 0.6844757 Both
Bacteria_Actinobacteriota_Actinobacteria_Micromonosporales_Micromonosporaceae_sp. 0.5922718 Both
Bacteria_Actinobacteriota_Actinobacteria_Frankiales_Acidothermaceae_Acidothermus_sp. 0.6374043 Both
Bacteria_Firmicutes_Clostridia_Lachnospirales_Lachnospiraceae_Lachnoclostridium_sp. 0.5324634 Both
Bacteria_Firmicutes_Bacilli_Lactobacillales_Streptococcaceae_Lactococcus_lactis 0.5564787 Both
Bacteria_Firmicutes_Bacilli_Lactobacillales_Streptococcaceae_Lactovum_sp. 0.6891835 Both
Bacteria_Firmicutes_Bacilli_Thermoactinomycetales_Thermoactinomycetaceae_Thermoactinomyces_intermedius 0.6628205 Both
Bacteria_Firmicutes_Bacilli_Paenibacillales_Paenibacillaceae_Ammoniphilus_sp. 0.5567843 Both
Bacteria_Firmicutes_Bacilli_Bacillales_Bacillaceae_Fictibacillus_sp. 0.6320346 Both
Bacteria_Firmicutes_Bacilli_Bacillales_Bacillaceae_Bacillus_smithii 0.6382824 Both
Bacteria_Firmicutes_Bacilli_Bacillales_Bacillaceae_Bacillus_huizhouensis 0.5707471 Both
Bacteria_Firmicutes_Bacilli_Bacillales_Bacillaceae_Bacillus_circulans 0.5950212 Both
Bacteria_Firmicutes_Bacilli_Bacillales_Bacillaceae_Bacillus_jeotgali 0.5403659 Both
Bacteria_Firmicutes_Bacilli_Bacillales_Bacillaceae_Bacillus_megaterium 0.5745231 Both
Bacteria_Firmicutes_Bacilli_Bacillales_Bacillaceae_Bacillus_mycoides 0.5541503 Both
Bacteria_Firmicutes_Bacilli_Bacillales_Bacillaceae_Bacillus_acidiceler 0.7212670 Both
Bacteria_Bdellovibrionota_Bdellovibrionia_Bdellovibrionales_Bdellovibrionaceae_Bdellovibrio_sp. 0.7549192 Both
Bacteria_Desulfobacterota_Desulfuromonadia_Geobacterales_Geobacteraceae_Geobacter_pickeringii 0.5146844 Both
Bacteria_Desulfobacterota_Desulfuromonadia_Geobacterales_Geobacteraceae_Citrifermentans_sp. 0.5816359 Both
Bacteria_Desulfobacterota_Desulfuromonadia_Geobacterales_Geobacteraceae_Geobacter_sp. 0.5616400 Both
Bacteria_Desulfobacterota_Desulfobaccia_Desulfobaccales_Desulfobaccaceae_Desulfobacca_sp. 0.6707201 Both
Bacteria_Desulfobacterota_Desulfomonilia_Desulfomonilales_Desulfomonilaceae_Desulfomonile_sp. 0.8849838 Both
Bacteria_Desulfobacterota_Syntrophobacteria_Syntrophobacterales_Syntrophobacteraceae_sp. 0.6969167 Both
Bacteria_Myxococcota_Myxococcia_Myxococcales_Myxococcaceae_P3OB-42_sp. 0.7695590 Both
Bacteria_Myxococcota_Myxococcia_Myxococcales_27F-1492R_sp. 0.5421231 Both
Bacteria_Myxococcota_Myxococcia_Myxococcales_Myxococcaceae_sp. 0.7190433 Both
Bacteria_Myxococcota_Myxococcia_Myxococcales_Anaeromyxobacteraceae_Anaeromyxobacter_dehalogenans 0.8426102 Both
Bacteria_Myxococcota_Myxococcia_Myxococcales_Anaeromyxobacteraceae_Anaeromyxobacter_sp. 0.8359976 Both
Bacteria_Myxococcota_Polyangia_Polyangiales_Sandaracinaceae_sp. 0.5818338 Both
Bacteria_Myxococcota_Polyangia_Polyangiales_Polyangiaceae_sp. 0.7727036 Both
Bacteria_Myxococcota_Polyangia_Polyangiales_Polyangiaceae_Sorangium_cellulosum 0.6847639 Both
Bacteria_Myxococcota_Polyangia_Polyangiales_Polyangiaceae_Polyangium_sp. 0.7406944 Both
Bacteria_Myxococcota_Polyangia_Polyangiales_Polyangiaceae_Labilithrix_luteola 0.7194563 Both
Bacteria_Myxococcota_Polyangia_Polyangiales_Polyangiaceae_Pajaroellobacter_sp. 0.6935694 Both
Bacteria_Acidobacteriota_Thermoanaerobaculia_Thermoanaerobaculales_Thermoanaerobaculaceae_Subgroup 10_sp. 0.8635404 Both
Bacteria_Acidobacteriota_Vicinamibacteria_Vicinamibacterales_Vicinamibacteraceae_Vicinamibacter_sp. 0.6156368 Both
Bacteria_Acidobacteriota_Holophagae_Holophagales_Holophagaceae_sp. 0.5860303 Both
Bacteria_Acidobacteriota_Holophagae_Holophagales_Holophagaceae_Holophaga_sp. 0.8422655 Both
Bacteria_Acidobacteriota_Blastocatellia_Blastocatellales_Blastocatellaceae_sp. 0.5301423 Both
Bacteria_Acidobacteriota_Acidobacteriae_Acidobacteriales_Acidobacteriaceae (Subgroup 1)_Granulicella_sp. 0.6403266 Both
Bacteria_Acidobacteriota_Acidobacteriae_Acidobacteriales_Acidobacteriaceae (Subgroup 1)_Edaphobacter_sp. 0.6315324 Both
Bacteria_Acidobacteriota_Acidobacteriae_Acidobacteriales_Acidobacteriaceae (Subgroup 1)_Acidipila-Silvibacterium_sp. 0.8469249 Both
Bacteria_Acidobacteriota_Acidobacteriae_Acidobacteriales_Acidobacteriaceae (Subgroup 1)_Occallatibacter_sp. 0.7149300 Both
Bacteria_Acidobacteriota_Acidobacteriae_Acidobacteriales_Koribacteraceae_Candidatus Koribacter_sp. 0.5166152 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Xanthomonadaceae_Luteimonas_sp. 0.5706428 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Xanthomonadaceae_Lysobacter_dokdonensis 0.5319226 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Rhodanobacteraceae_Mizugakiibacter_sp. 0.5189774 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Rhodanobacteraceae_Chujaibacter_sp. 0.9353416 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Rhodanobacteraceae_Rudaea_sp. 0.5589712 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Rhodanobacteraceae_Rhodanobacter_sp. 0.5944773 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Rhodanobacteraceae_sp. 0.8172390 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Rhodanobacteraceae_Dyella_sp. 0.7964313 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales_Rhodanobacteraceae_Dyella_jiangningensis 0.5983202 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Gammaproteobacteria Incertae Sedis_Unknown Family_Candidatus Ovatusbacter_sp. 0.7042585 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Legionellales_Legionellaceae_Legionella_sp. 0.9150260 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Diplorickettsiales_Diplorickettsiaceae_sp. 0.6334224 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Diplorickettsiales_Diplorickettsiaceae_Aquicella_sp. 0.5630866 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Steroidobacterales_Woeseiaceae_JTB255 marine benthic group_sp. 0.6488881 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Steroidobacterales_Steroidobacteraceae_Steroidobacter_sp. 0.7517461 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Steroidobacterales_Steroidobacteraceae_sp. 0.5649264 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Gammaproteobacteria Incertae Sedis_Unknown Family_Acidibacter_sp. 0.5832372 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Chromobacteriaceae_Pseudogulbenkiania_sp. 0.5557035 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Chromobacteriaceae_Crenobacter_sp. 0.7886149 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Nitrosomonadaceae_Ellin6067_sp. 0.6726064 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Comamonadaceae_Ramlibacter_sp. 0.7726001 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Comamonadaceae_Variovorax_sp. 0.7841464 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Comamonadaceae_Leptothrix_sp. 0.5919403 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Comamonadaceae_Rivibacter_sp. 0.5417826 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Comamonadaceae_Rhizobacter_sp. 0.5587365 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Comamonadaceae_Methylibium_sp. 0.5498729 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Burkholderiaceae_Burkholderia-Caballeronia-Paraburkholderia_cepacia 0.5754227 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Burkholderiaceae_Burkholderia-Caballeronia-Paraburkholderia_caribensis 0.5663016 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Burkholderiaceae_Burkholderia-Caballeronia-Paraburkholderia_unamae 0.7029974 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Burkholderiaceae_Burkholderia-Caballeronia-Paraburkholderia_sp. 0.6329409 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Oxalobacteraceae_sp. 0.7525625 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Alcaligenaceae_Achromobacter_sp. 0.7758252 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Alcaligenaceae_Bordetella_sp. 0.6417044 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Sutterellaceae_sp. 0.7604876 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_TRA3-20_sp. 0.6423851 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_B1-7BS_sp. 0.9461865 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Nitrosomonadaceae_GOUTA6_sp. 0.6266310 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Nitrosomonadaceae_MND1_sp. 0.5349263 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Rhodocyclaceae_Azovibrio_sp. 0.5663115 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Rhodocyclaceae_sp. 0.6671637 Both
Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Gallionellaceae_Candidatus Nitrotoga_sp. 0.5926731 Both
Bacteria_Bdellovibrionota_Bdellovibrionia_Bdellovibrionales_Bdellovibrionaceae_OM27 clade_sp. 0.5649430 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Tistrellales_Geminicoccaceae_Candidatus Alysiosphaera_sp. 0.8720591 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Acetobacterales_Acetobacteraceae_Roseomonas_sp. 0.5157345 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Acetobacterales_Acetobacteraceae_Acidisoma_sp. 0.5539642 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Acetobacterales_Acetobacteraceae_Acidicaldus_sp. 0.5939931 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Reyranellales_Reyranellaceae_sp. 0.7159113 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Reyranellales_Reyranellaceae_Reyranella_sp. 0.5216228 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Rickettsiales_AB1_sp. 0.7640337 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Holosporales_Holosporaceae_sp. 0.7971221 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Rhodospirillales_AEGEAN-169 marine group_sp. 0.7536229 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Rhodospirillales_Magnetospirillaceae_Telmatospirillum_sp. 0.7563825 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Azospirillales_Inquilinaceae_Inquilinus_sp. 0.7120786 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Elsterales_Elsteraceae_sp. 0.8026076 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Dongiales_Dongiaceae_Dongia_soli 0.5385612 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Hyphomonadaceae_sp. 0.7937143 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Novosphingobium_sp. 0.7662949 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Sphingobium_sp. 0.5771225 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Altererythrobacter_sp. 0.7093105 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Plot4-2H12_sp. 0.7593289 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Sphingomonadales_Sphingomonadaceae_Ellin6055_sp. 0.5267744 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_A0839_sp. 0.8214840 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_KF-JG30-B3_sp. 0.5627429 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Micropepsales_Micropepsaceae_Micropepsis_sp. 0.7022573 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Micropepsales_Micropepsaceae_sp. 0.6330073 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Caulobacteraceae_Phenylobacterium_sp. 0.6545267 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Caulobacterales_Caulobacteraceae_sp. 0.6976044 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Rhizobiales Incertae Sedis_sp. 0.5820610 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Rhizobiales Incertae Sedis_Nordella_oligomobilis 0.5555472 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Hyphomicrobiaceae_Pedomicrobium_sp. 0.9299934 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Hyphomicrobiaceae_Hyphomicrobium_facile 0.6508398 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Hyphomicrobiaceae_Hyphomicrobium_denitrificans 0.5503336 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Devosiaceae_sp. 0.8341489 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Devosiaceae_Devosia_sp. 0.7136770 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_D05-2_sp. 0.6964526 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Rhizobiaceae_Allorhizobium-Neorhizobium-Pararhizobium-Rhizobium_sp. 0.6423992 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Rhizobiaceae_Allorhizobium-Neorhizobium-Pararhizobium-Rhizobium_etli 0.6206867 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Rhizobiaceae_Allorhizobium-Neorhizobium-Pararhizobium-Rhizobium_rhizogenes 0.6286479 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Rhizobiaceae_Aminobacter_sp. 0.6544200 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Rhizobiaceae_Mesorhizobium_plurifarium 0.6019286 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Beijerinckiaceae_Bosea_sp. 0.6265666 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Kaistiaceae_Kaistia_sp. 0.5505405 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Beijerinckiaceae_sp. 0.6011347 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Beijerinckiaceae_Methylocystis_sp. 0.6065003 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Beijerinckiaceae_alphaI cluster_sp. 0.5353337 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Beijerinckiaceae_Rhodoblastus_sp. 0.7267078 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Beijerinckiaceae_Roseiarcus_sp. 0.5785655 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Xanthobacteraceae_Pseudorhodoplanes_sp. 0.7592489 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Xanthobacteraceae_Bradyrhizobium_iriomotense 0.5882948 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Xanthobacteraceae_Nitrobacter_sp. 0.5269758 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Xanthobacteraceae_Afipia_sp. 0.5690086 Both
Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Xanthobacteraceae_sp. 0.6204676 Both





Assembly over time

These are taxa that ONLY appear after a certain time point

Here’s probably a better way to show these taxa

Collaborator Carl Hjelmen put these together. He’s a phylogeny guy.

Anyway, Here are 2 versions - One showing the number of unique ASVs, the other showing the relative abundance values. I like these, and I think we could have both versions of the heatmaps plotted next to the trees. We will do this for bacteria also of course. But wanted your feedback…